Pairwise Alignments

Query, 345 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 298 a.a., Tyrosine recombinase XerD from Pseudomonas putida KT2440

 Score = 54.7 bits (130), Expect = 3e-12
 Identities = 53/219 (24%), Positives = 95/219 (43%), Gaps = 24/219 (10%)

Query: 136 LNLLSGMFSRLIKYKQWNLPNPLDDIEPIKVNQRALAYLDKADIQPFLQRLGGFESDGRS 195
           L+ L G F  L++ K   + +P   ++  ++ +     L +AD++  LQ     E+ G+ 
Sbjct: 77  LSGLRGFFRYLLREKLVAI-DPTLQVDMPQLGKPLPKSLSEADVEALLQAPDLGEAIGQR 135

Query: 196 VSIPEIVLIAKICLATGARISEALSLERSQISEFK-LTFVETKGKRIRSVPISENLY--- 251
                   + ++  A G R++E +SL   Q++  + +  V  KG + R VP+ E      
Sbjct: 136 DRA-----MLEVLYACGLRVTELVSLTLDQVNLRQGVLRVMGKGSKERLVPMGEEAVVWL 190

Query: 252 -------KEIMLASSSSTKIFSTTYGSA-------HRYIKKALPDYVPEGQATHVLRHTF 297
                  +  +L    S  +F +  G         HR    A    + +  + H LRH F
Sbjct: 191 ERYQRDGRAELLNGRPSDVLFPSQRGEQMTRQTFWHRIKHHARVAGIDKPLSPHTLRHAF 250

Query: 298 ATHFMMNRGDILILQRILGHQKIEQTMAYAHFSPDHLIQ 336
           ATH + +  D+ ++Q +LGH  +  T  Y H +   L Q
Sbjct: 251 ATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAKARLQQ 289