Pairwise Alignments

Query, 345 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 300 a.a., Tyrosine recombinase XerC from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 57.0 bits (136), Expect = 6e-13
 Identities = 54/225 (24%), Positives = 92/225 (40%), Gaps = 22/225 (9%)

Query: 125 KSLSPTYQNFQLNLLSGMFSRLIKYKQWNLPNPLDDIEPIKVNQRALAYLDKADIQPFLQ 184
           K L P     +L+ L   F  L+   +    NP   +   K  +     +D  D+   L 
Sbjct: 68  KGLGPASLALRLSALRSFFDWLVSQGELKA-NPAKGVSAPKAPRHLPKNIDVDDVNRLL- 125

Query: 185 RLGGFESDGRSVSIPEIVLIAKICLATGARISEALSLERSQIS-EFKLTFVETKGKRIRS 243
                + D           + ++    G R+SE + L+   +  +    +V  KG + R 
Sbjct: 126 -----DIDLNDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERR 180

Query: 244 VPISENLYKEIM-------LASSSSTKIFSTTYGS--AHRYIKKALPDY-VPEGQATHV- 292
           +PI  N    I        L +S    +F +  G   + R ++K   ++ + +G  +HV 
Sbjct: 181 LPIGRNAVTWIEHWLDLRGLFASDEEALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVH 240

Query: 293 ---LRHTFATHFMMNRGDILILQRILGHQKIEQTMAYAHFSPDHL 334
              LRH+FATH + + GD+  +Q +LGH  +  T  Y H    HL
Sbjct: 241 PHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHL 285