Pairwise Alignments

Query, 345 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 344 a.a., tyrosine-type recombinase/integrase from Erwinia tracheiphila SCR3

 Score =  256 bits (653), Expect = 8e-73
 Identities = 139/348 (39%), Positives = 212/348 (60%), Gaps = 24/348 (6%)

Query: 1   MSVRNLKDGSKKPWLCECYPQGREGKRVRKRFATKGEATAYENFIMREVDDKPWMGSKPD 60
           M+VR    G    W+CE YP G +GKR+RK+FATKGEA A+E   ++     PW   K D
Sbjct: 1   MTVRKNPAGG---WICELYPNGAKGKRIRKKFATKGEALAFEQHTVQN----PWQEEKED 53

Query: 61  NRRLSELLETWWQVHGHTIKSGKVVYRKTAL--TIKELGDPIASTFTSKQYLAFRASRVS 118
            R L EL+++W+  HG T+K G  + R+ A+    + +G+P+A  F ++ +  +R  R+ 
Sbjct: 54  RRTLKELVDSWYSAHGITLKDG--LKRQLAMHHAFECMGEPLARDFDAQMFSRYREKRLK 111

Query: 119 -HFNKEN--KSLSPTYQNFQLNLLSGMFSRLIKYKQWNLPNPLDDIEPIKVNQRALAYLD 175
             + + N  K +SP   N +L     +F+ L +  +W   NPL ++ P +  +  +A+L 
Sbjct: 112 GEYARSNRVKEVSPRTLNLELTYFRAVFNELNRLGEWKGENPLKNMRPFRTEEMEMAWLT 171

Query: 176 KADIQPFLQRLGGFESDGRSVSIPEIVLIAKICLATGARISEALSLERSQISEFKLTFVE 235
              I   L        + +    P++  + +ICLATGAR SEA SL++SQ++++K+T+  
Sbjct: 172 HDQISQLL-------GECKRHDHPDLETVVRICLATGARWSEAESLKKSQLAKYKITYTN 224

Query: 236 TKGKRIRSVPISENLYKEIMLASSSSTKIFSTTYGSAHRYIKKALPDYVPEGQATHVLRH 295
           TKG++ R+VPIS+ LY+   L      ++FS  YG+    +++   + +P GQ THVLRH
Sbjct: 225 TKGRKNRTVPISKELYES--LPDDKKGRLFSDCYGAFRSALERTGIE-LPAGQLTHVLRH 281

Query: 296 TFATHFMMNRGDILILQRILGHQKIEQTMAYAHFSPDHLIQAVQLNPL 343
           TFA+HFMMN G+IL+LQR+LGH  I+ TM YAHF+PDHL  AV+LNPL
Sbjct: 282 TFASHFMMNGGNILVLQRVLGHTDIKMTMRYAHFAPDHLEDAVKLNPL 329