Pairwise Alignments

Query, 345 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 339 a.a., integrase from Escherichia coli ECRC62

 Score =  290 bits (741), Expect = 5e-83
 Identities = 159/348 (45%), Positives = 222/348 (63%), Gaps = 19/348 (5%)

Query: 1   MSVRNLKDGSKKPWLCECYPQGREGKRVRKRFATKGEATAYENFIMREVDDKPWMGSKPD 60
           M+VR   +G    WLCECYP GR GKRVRK+FATKGEA A+E+F M EV+ KPW+G K D
Sbjct: 1   MTVRKQPNGK---WLCECYPNGRNGKRVRKQFATKGEAIAFESFTMEEVNKKPWLGEKDD 57

Query: 61  NRRLSELLETWWQVHGHTIKSGKVVYRKTALTIKELGDPIASTFTSKQYLAFRASRVSH- 119
            RRLSEL+E W+ ++G T+   K +  K  +    LGDPIAS  T+  +  +R +R+   
Sbjct: 58  RRRLSELIELWYSLYGQTLADPKRLMAKLRIICNGLGDPIASELTAGDFTKYREARLKGE 117

Query: 120 -FNKENKSLSPTYQ---NFQLNLLSGMFSRLIKYKQWNLPNPLDDIEPIKVNQRALAYLD 175
             N++   +SP      N +   LS +F  L K   W+ PNPL  +   K+ +  LA+L 
Sbjct: 118 VRNEDGVLMSPVKPRTVNLEQRNLSSVFGTLKKLGHWSAPNPLAGLPTFKIAEGELAFLT 177

Query: 176 KADIQPFLQRLGGFESDGRSVSIPEIVLIAKICLATGARISEALSLERSQISEFKLTFVE 235
             +I+  L       +D  S S   +++IAKICLATGAR SEA +L+  Q++++++T+ +
Sbjct: 178 TEEIKRLLDAC----ADSHSSS---LLMIAKICLATGARWSEAENLQGHQLTKYRITYTK 230

Query: 236 TKGKRIRSVPISENLYKEIMLASSSSTKIFSTTYGSAHRYIKKALPDYVPEGQATHVLRH 295
           TKGK+ R++PIS+ LY E+     +  K+F+    +  R +K+A  D +PEGQ THVLRH
Sbjct: 231 TKGKKNRTIPISQELYDEL---PKNRGKLFTPCRKAFERAVKRAGID-LPEGQCTHVLRH 286

Query: 296 TFATHFMMNRGDILILQRILGHQKIEQTMAYAHFSPDHLIQAVQLNPL 343
           TFA++FMMN G+IL+L+ ILGH  I+ TM YAHFSPDHL  AV  NPL
Sbjct: 287 TFASYFMMNGGNILVLKEILGHADIKMTMIYAHFSPDHLEDAVTKNPL 334