Pairwise Alignments

Query, 345 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 363 a.a., site-specific integrase from Dickeya dianthicola ME23

 Score =  272 bits (695), Expect = 1e-77
 Identities = 149/348 (42%), Positives = 206/348 (59%), Gaps = 19/348 (5%)

Query: 1   MSVRNLKDGSKKPWLCECYPQGREGKRVRKRFATKGEATAYENFIMREVDDKPWMGSKPD 60
           M+VR L  G    WLCECYP GREGKRVRK+FATKGEA A+E F M E ++KPW+G K D
Sbjct: 1   MAVRKLASGK---WLCECYPFGREGKRVRKQFATKGEALAFERFTMEESENKPWLGEKAD 57

Query: 61  NRRLSELLETWWQVHGHTIKSGKVVYRKTALTIKELGDPIASTFTSKQYLAFRASRVSHF 120
           NR L E+++ W+ ++G T+   K +  K  +    LG+P A   ++  +  +R  R++  
Sbjct: 58  NRSLREIIDLWFSLYGRTLADPKRMMAKLDIICTGLGNPKARELSAADFAHYRELRLAGQ 117

Query: 121 NKENKSL-----SPTYQNFQLNLLSGMFSRLIKYKQWNLPNPLDDIEPIKVNQRALAYLD 175
             +   +      P   N +   LS +F  L K   W+ PNPL  +   K+ Q+ LA+L 
Sbjct: 118 MTDASGIPLSVVKPRTVNLEQRNLSAVFGTLKKLGHWDAPNPLSGLPTFKIAQQELAFLA 177

Query: 176 KADIQPFLQRLGGFESDGRSVSIPEIVLIAKICLATGARISEALSLERSQISEFKLTFVE 235
             +I+  L             + P ++L+ KICLATGAR SEA  L   Q++ +++T+  
Sbjct: 178 PNEIKRVLDACA-------ESANPHLLLVTKICLATGARWSEAEGLSGQQVTPYRITYTR 230

Query: 236 TKGKRIRSVPISENLYKEIMLASSSSTKIFSTTYGSAHRYIKKALPDYVPEGQATHVLRH 295
           TKGK+ R+VPIS  LY EI      S K+FS    +  R I +     +P+GQ THVLRH
Sbjct: 231 TKGKKNRTVPISRELYDEI---PRKSGKLFSPCRKTFERAINRT-GIQLPDGQCTHVLRH 286

Query: 296 TFATHFMMNRGDILILQRILGHQKIEQTMAYAHFSPDHLIQAVQLNPL 343
           TFA+HFMMN G+IL+L+ ILGH  I+ TM YAHF+PDHL  A+  NPL
Sbjct: 287 TFASHFMMNGGNILVLRDILGHADIKMTMIYAHFAPDHLEDAITKNPL 334