Pairwise Alignments

Query, 345 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 299 a.a., site-specific tyrosine recombinase XerD from Dickeya dianthicola ME23

 Score = 52.4 bits (124), Expect = 1e-11
 Identities = 51/220 (23%), Positives = 95/220 (43%), Gaps = 29/220 (13%)

Query: 136 LNLLSGMFSRLIKYKQWNLPNPLDDIEPIKVNQRALAYLDKADIQPFLQRLGGFESDGRS 195
           L+ +  +F  L + KQ    +P   +   K+ QR    L +A +   L          + 
Sbjct: 77  LSAMRRLFQYLYREKQ-RTDDPSAPLSSPKLPQRLPKDLTEAQVDALLAA----PVTDQP 131

Query: 196 VSIPEIVLIAKICLATGARISEALSLERSQISEFK-LTFVETKGKRIRSVPISENLYK-- 252
           + + +  ++ ++  ATG R+SE + L  S +S  + +  V  KG + R VP+ E      
Sbjct: 132 IELRDKAML-ELLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKERLVPLGEEAVYWL 190

Query: 253 -----------------EIMLASSSSTKIFSTTYGSAHRYIKKALPDYVPEGQAT-HVLR 294
                            +++  S+ + ++   T+   HR    A    +   + + HVLR
Sbjct: 191 EQYLEYSRPWLLNGQTLDVLFPSNRAQQMTRQTFW--HRIKHYATLASIDSNKLSPHVLR 248

Query: 295 HTFATHFMMNRGDILILQRILGHQKIEQTMAYAHFSPDHL 334
           H FATH + +  D+ ++Q +LGH  +  T  Y H + + L
Sbjct: 249 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERL 288