Pairwise Alignments

Query, 345 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 294 a.a., Site-specific recombinase XerD from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 58.2 bits (139), Expect = 3e-13
 Identities = 54/231 (23%), Positives = 99/231 (42%), Gaps = 29/231 (12%)

Query: 125 KSLSPTYQNFQLNLLSGMFSRLIKYKQWNLPNPLDDIEPIKVNQRALAYLDKADIQPFLQ 184
           + LS T  N ++  L   +  L++  +    +P   +  +K +++   ++ ++ +   L 
Sbjct: 61  QGLSATTVNRKMATLRSFYKFLLRSGEIT-KDPTYKLRALKTSKKLPEFVQESTMDQLLN 119

Query: 185 RL---GGFESDGRSVSIPEIVLIAKICLATGARISEALSLERSQIS-EFKLTFVETKGKR 240
            L    GFE   R   + E + +      TG R+SE + L    I  + K   V  K K+
Sbjct: 120 DLEYEAGFEGQ-RDKMVMEFLYL------TGVRLSELIGLTWKDIDIQGKTVKVYGKRKK 172

Query: 241 IRSVPISENLYKEIMLASSSSTKIFSTTYGS----------------AHRYIKKALPDYV 284
            R +P++  L + I+       + FS    S                 +R ++K L  + 
Sbjct: 173 QRIIPLTNTLIENIISYKKDFKETFSNVNESDYFIVTISKKQAYPMIIYRIVRKYLDLFA 232

Query: 285 PEGQAT-HVLRHTFATHFMMNRGDILILQRILGHQKIEQTMAYAHFSPDHL 334
              + + H+LRHTFATH +    D+  ++ +LGH  +  T  Y H S + L
Sbjct: 233 QTSKRSPHLLRHTFATHLLNKGADLNAVKDLLGHANLAATQVYTHNSMEKL 283