Pairwise Alignments

Query, 345 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 331 a.a., site-specific tyrosine recombinase XerD from Agrobacterium fabrum C58

 Score = 53.5 bits (127), Expect = 7e-12
 Identities = 46/169 (27%), Positives = 71/169 (42%), Gaps = 32/169 (18%)

Query: 203 LIAKICLATGARISEALSLERSQI-SEFKLTFVETKGKRIRSVPIS-------------- 247
           L+ ++  ATG R+SE +SL    +  E +   +  KG + R V +S              
Sbjct: 150 LLLELLYATGMRVSELVSLPVKVLRQEGRFLMIRGKGNKDRMVLLSRAAIEAMEKYEAGR 209

Query: 248 ENLYKEIMLASSSSTK--------IFSTTYGSAH---RYIKKALPDYVPEGQAT------ 290
           + L +E   A++S  K        +F +     H   +   + L D       T      
Sbjct: 210 KALSQEKSKAAASQKKTDTAESPWLFPSNSKEGHLPRQVFARDLKDIAIRAGLTASAVSP 269

Query: 291 HVLRHTFATHFMMNRGDILILQRILGHQKIEQTMAYAHFSPDHLIQAVQ 339
           HVLRH FA+H + N  D+  +Q +LGH  I  T  Y H   + L + VQ
Sbjct: 270 HVLRHAFASHLLQNGADLRAVQELLGHSDISTTQIYTHVLEERLQELVQ 318