Pairwise Alignments

Query, 345 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 315 a.a., site-specific recombinase from Agrobacterium fabrum C58

 Score = 50.8 bits (120), Expect = 5e-11
 Identities = 48/199 (24%), Positives = 84/199 (42%), Gaps = 33/199 (16%)

Query: 153 NLPNPLDDIEPIKVNQRALAYLDKADIQPFLQRLGGFESDGRSVSIPEIVLIAKICLATG 212
           +LP PL D + +K+   A A L++   +P++                    +  +    G
Sbjct: 126 SLPKPLTDRQALKITT-AEAQLNE---EPWIAARNA--------------AVLSLLYGCG 167

Query: 213 ARISEALSLERSQISEFKLTF-VETKGKRIRSVPI------SENLYKEIM-LASSSSTKI 264
            RISEAL L  +       +  +  KG + R VP+      + + Y+++   A ++   +
Sbjct: 168 LRISEALGLTPADFPPGTRSLRITGKGNKTRIVPLLAVVTEAVDTYRKLCPYALAADEPM 227

Query: 265 FSTTYGSA------HRYIKKALPDY-VPEGQATHVLRHTFATHFMMNRGDILILQRILGH 317
           F    G         R ++K    + +PE    H LRH+FATH +   GD+  +Q +LGH
Sbjct: 228 FLGARGGKLQPAIIQREMQKLRGAFGLPENATPHALRHSFATHLLAGGGDLRTIQELLGH 287

Query: 318 QKIEQTMAYAHFSPDHLIQ 336
             +  T  Y       L++
Sbjct: 288 ASLSTTQVYTGVDTARLLE 306