Pairwise Alignments

Query, 861 a.a., replication endonuclease from Vibrio cholerae E7946 ATCC 55056

Subject, 831 a.a., replication endonuclease from Erwinia tracheiphila SCR3

 Score =  233 bits (593), Expect = 5e-65
 Identities = 186/615 (30%), Positives = 273/615 (44%), Gaps = 96/615 (15%)

Query: 165 DEKDRKPVKQRLLAELEQDELRDMAFRIAKIMEAYLQLTASRKHADREE-----DVDQAV 219
           D + R P  Q + A+   D L D+     + ++    LTA     +         V+ ++
Sbjct: 151 DTRFRTPAYQYVTAKERLDALLDLPRLTKREIQTAATLTAGAIEGEFNRLCDLYGVNFSL 210

Query: 220 VDAYEALAHFCTQTFGIKA-PRKYQK-QTHLSASSD---------IMRMISDSWWLGRLV 268
            DA EA  +     F +   P  ++  +T     S+         I R+   +WW  +L 
Sbjct: 211 NDALEAYQNLARTVFKLNVTPAGWEALRTDNDRRSEPDLEQLPGAIARLTCANWWQRKLW 270

Query: 269 KVRKIMREHLAIAMGQVSNNASPYASWDCVREHQEQQQRNYEAIKNMVLFDEETEEEHDL 328
           ++R+I RE    A G VS   S Y S D + EH++Q++R  + +K+  L +E+     DL
Sbjct: 271 RLRRIWREEQLRAAGMVSKTTSVYLSRDALTEHRDQRRRMRDFLKSYELVNEDGFTI-DL 329

Query: 329 WDMVKKSVSNPAIRRHELMVRCRGCEDIGNELGLQGLFLTLTTPSKYHNSYKKGGFIDHW 388
            D      SNP  RR E+M   +G E+I    G + +FLT+T PS++H + + G     W
Sbjct: 330 EDAYYAGNSNPKHRRFEMMTTMKGMENIAEARGDEAVFLTVTCPSRFHATLESGPLNPKW 389

Query: 389 NGASPRDAQAYL-NKKWQLIRAKLNRDEIRWFGVRVAEPHHDGTPHWHLLIWVRKEDISA 447
           +G++ RD+  YL N  +  +R KLNR ++RW+GVRVAEPHHDGT HWH++I+    +  A
Sbjct: 390 DGSTVRDSSDYLVNVFFAGVRKKLNRKKLRWYGVRVAEPHHDGTVHWHMMIFAHPNEREA 449

Query: 448 VRDTFITYATEEDRGELHPEFEKEKQKPFRKGVYVGPLDYRPRCDFGYIDPTKGTATGYI 507
           + D    +A  EDR EL                     D  PR +   I   KGT T YI
Sbjct: 450 IVDIVREFAIREDRAELGD-------------------DITPRFESELITKEKGTPTSYI 490

Query: 508 AKYISKNIDGYAMDG--------DISDETGKPVKDMARNVSAWKSRWSIRQFQFFGGAPV 559
           A YI KN+DG A+ G         + +++GK + D   +   W     +RQFQFFG    
Sbjct: 491 ATYIGKNVDGAAVGGIDPKTGQPRVDNDSGKSMADSVEHAIGWTGLHGVRQFQFFGIPSR 550

Query: 560 TTYRELRRLANQNKKAFMEYIFMQERADLISMYELLHYQLIGAFKPARVMTNQELVEVIA 619
             YRELRRLA Q          M  + D     EL          P + M N        
Sbjct: 551 QAYRELRRLAVQ----------MSRQKD--GPAEL----------PDKSMDN-------- 580

Query: 620 QSYEARAKTEIPHVAAVLRSADEGRWHGYIMNQGGPFVKRKELLVTNVYQELPFASPYAE 679
                           VL +AD G +  YI +QGG  + RK+ L+   Y      + Y E
Sbjct: 581 ----------------VLVAADAGCFASYINSQGGVLIPRKDYLIRTAYDVADKLNDYGE 624

Query: 680 AIRKLEGIATP----EQVIKTREKVWTIKRKGKETTEGEAVGFGSEATAFGGSAASRSSV 735
           A  ++ GI  P    E  + T    W + RK  ++   EA+  G +    GG  A  +  
Sbjct: 625 AGIQIFGIWAPALGEESRVCTHPDNWVMVRKRIKSASEEALK-GVDPDLRGGPDAPWTRG 683

Query: 736 NNCTDPFTGQVSTQL 750
           NNC        ST +
Sbjct: 684 NNCPPEQNSDKSTDI 698