Pairwise Alignments

Query, 861 a.a., replication endonuclease from Vibrio cholerae E7946 ATCC 55056

Subject, 680 a.a., replication endonuclease from Escherichia coli ECRC62

 Score =  236 bits (601), Expect = 4e-66
 Identities = 206/719 (28%), Positives = 322/719 (44%), Gaps = 94/719 (13%)

Query: 15  FPWQAPLSPIN--YDVTAIAAGHKVANVEPDDMSVIERRLYEVDALSHE-WRKAFFQDVP 71
           F W +P   IN   D   +A    ++N+     +  E+     +ALS + W + FF +  
Sbjct: 19  FSWNSPKKAINPYLDPVEVAPVSTLSNLITLYAADNEQEQLRREALSDQVWERYFFNESR 78

Query: 72  PYLAKYFAERYIRTYEKKGARAANSFLREKMHPAKERVLKVLQQYKQL--PNTQKVALLS 129
             + +   +      +K  +RA  +  +++ +P    +  V  Q   +  P  Q++   S
Sbjct: 79  DPVQREMEQ------DKLISRAKLAHEQQRFNPDMVILADVNAQPSHISKPLMQRIEYFS 132

Query: 130 KEFEDGEDPFHPVFFTEYGNP-----EDIKSKQVSFDFEKDEKDRKPVKQRLLAELEQDE 184
                G    +  +  E   P     E ++  Q+S  F             +L E+ QD+
Sbjct: 133 SL---GRPKAYSRYLRETIKPCLERLEHVRDSQLSASFRFMASHEGLDGLLILPEMSQDQ 189

Query: 185 LRDMAFRIAKIMEAYLQLTASRKHADREEDVDQAVVDAYEALAHFCTQTFGI-------- 236
           ++ ++  +A  M   L       +A  +   ++ + + +E +A    +   I        
Sbjct: 190 VKRLSTLVAAHMSMCLDAACGDLYATDDVKPEE-IRNTWERVAAETLRLDVIPPAFEQLR 248

Query: 237 -KAPRKYQKQTHLSASSDIMRMISDSWWLGRLVKVRKIMREHLAIAMGQVSNNASPYASW 295
            K  R+      L   S + RM+   WW  +L K+R   RE    A+  VS  ASPY S+
Sbjct: 249 RKRNRRKPVPYELIPGS-LARMLCADWWYRKLWKMRCEWREEQLRAVCLVSKKASPYVSY 307

Query: 296 DCVREHQEQQQRNYEAIKNMVLFDEETEEEHDLWDMVKKSVSNPAIRRHELMVRCRGCED 355
           + V   +EQ++++ E  ++  L +E+ +   D+ D+V  S SNPA RR+E+M   +G E 
Sbjct: 308 EAVMHKREQRRKSLEFFRSHELVNEDGDTL-DMEDVVNASSSNPAHRRNEMMACVKGLEL 366

Query: 356 IGNELGLQGLFLTLTTPSKYHNSYKKGGFIDHWNGASPRDAQAYLNKKWQLIRAKLNRDE 415
           I    G   +F T+T PS++H++   G     W  A+ R +  YL   +   R  +++  
Sbjct: 367 IAEMRGDCAVFYTITCPSRFHSTLNNGRPNPTWTNATVRQSSDYLVGMFAAFRKAMHKAG 426

Query: 416 IRWFGVRVAEPHHDGTPHWHLLIWVRKEDISAVRDTFITYATEEDRGELHPEFEKEKQKP 475
           +RW+GVRVAEPHHDGT HWHLL ++RK+D   +      +A  EDR EL           
Sbjct: 427 LRWYGVRVAEPHHDGTVHWHLLCFMRKKDRRTITALLRKFAIREDREEL----------- 475

Query: 476 FRKGVYVGPLDYRPRCDFGYIDPTKGTATGYIAKYISKNIDGYAMDGDISDETGKPVKDM 535
              G   G     PR     I+P KGT T YIAKYISKNIDG  + G+IS ETGK ++D 
Sbjct: 476 ---GNNTG-----PRFKSELINPRKGTPTSYIAKYISKNIDGRGLAGEISKETGKSLRDN 527

Query: 536 ARNVSAWKSRWSIRQFQFFGGAPVTTYRELRRLANQNKKAFMEYIFMQERADLISMYELL 595
           A  V+AW S   ++QF+FFG      YRELR LA Q  +         ++ D  +     
Sbjct: 528 AEYVNAWASLHRVQQFRFFGIPGRQAYRELRLLAGQAAR---------QQGDKKA----- 573

Query: 596 HYQLIGAFKPARVMTNQELVEVIAQSYEARAKTEIPHVAAVLRSADEGRWHGYIMNQGGP 655
                     A V+ N                   P + A+L +AD G +  YIM QGG 
Sbjct: 574 ---------GAPVLDN-------------------PRLDAILAAADAGCFATYIMKQGGV 605

Query: 656 FVKRKELLVTNVYQELPFASPYAEAIRKLEGIATP--EQVIKTREKVWTIKRKGKETTE 712
            V RK  L+   Y+     + Y +   ++ GI +P  E  I T    W + RK  +  E
Sbjct: 606 LVPRKYHLIRTAYEINEEPTAYGDHGIRIYGIWSPIAEGKICTHAVKWKMVRKAVDVQE 664