Pairwise Alignments

Query, 348 a.a., phage portal protein from Vibrio cholerae E7946 ATCC 55056

Subject, 342 a.a., putative capsid portal protein from Escherichia coli BL21

 Score =  188 bits (477), Expect = 2e-52
 Identities = 113/323 (34%), Positives = 168/323 (52%), Gaps = 10/323 (3%)

Query: 2   TEQLIHSHTTDGTESKSVYSFDPNPEPVDTNSWMTRYCELFYNDFDDYWEPPISLKGLAE 61
           T Q+ H + T    S   +SF  +P PV     +  Y E      D ++EPP+S  GLA 
Sbjct: 13  TNQIQHKNQT----SAEAFSFG-DPVPVLDRRELLDYVECV--KMDRWYEPPVSFDGLAR 65

Query: 62  IANANGYHGSLLKARANYVAGRFMNGGGLPMYKMNSACWDYFGLGMSAFVKIRSYLKNVI 121
              A  +H S +  + N +   ++    L     +    DY   G +   K  +    VI
Sbjct: 66  TFRAAVHHSSPIAVKCNILTSTYIPHPLLSQQAFSRFVQDYLVFGNAYLEKRTNRFGEVI 125

Query: 122 ALEPLPMVHMRKRKNGD---FVQLLRNNEQKVFKAKDVIFIPQYDPQQQIYGLPDYLGSI 178
           ALEP    + R+  + D   FVQ     +   F    +  + + D  Q+IYGLP YL +I
Sbjct: 126 ALEPALAKYTRRGLDLDTYWFVQYGMTTQPYQFTKGSIFHLMEPDINQEIYGLPGYLSAI 185

Query: 179 QSSLLNRDATLFRRRYYLNGAHMGFIFYATDPNLSEADEKALKEKIASSKGIGNFRSMFV 238
            S+LLN  ATLFRR+YY+NG+H GFI Y TD   ++ D   L+  + S+KG GNFR++F+
Sbjct: 186 PSALLNESATLFRRKYYINGSHAGFIMYMTDAAQNQEDVNNLRNAMKSAKGPGNFRNLFM 245

Query: 239 NIPNGKEKGIQLIPVGDIATKDEFERIKNITAQDIFVGHRFPAGMGGMLPQQGANVPDPL 298
             PNGK+ G+Q+IP+ ++  KDEF  IKN++  D+   HR P  M G++P       D  
Sbjct: 246 YSPNGKKDGLQIIPLSEVTAKDEFLNIKNVSRDDMMAAHRVPPQMMGIMPNNVGGFGDVE 305

Query: 299 KVSQVYDFYEVIPVCKRFMDAVN 321
           K S+V+   E++P+ KR  +  N
Sbjct: 306 KASKVFVRNELMPLQKRLQELNN 328