Pairwise Alignments

Query, 605 a.a., terminase from Vibrio cholerae E7946 ATCC 55056

Subject, 585 a.a., terminase ATPase subunit family protein from Pseudomonas fluorescens SBW25

 Score =  479 bits (1234), Expect = e-139
 Identities = 270/597 (45%), Positives = 363/597 (60%), Gaps = 42/597 (7%)

Query: 8   RQAARALYLKAWTPREIADELNLNSDRIIYYWADKFGWRDMLREQTIDEAIANRIQTLLE 67
           R+ A+ LY + +   EIA EL    ++ ++ W  +  W      + I  A   R+  L+ 
Sbjct: 12  RRHAKHLYWQGYRVCEIA-ELIGEKEKTLHSWKARDEWDRATPLERIQAATEARLVQLI- 69

Query: 68  VENPSK----PQLDMLDRLINHHVKLKKLR--ATEQPTQPNEAGTVSAQSGAHNSKSGSP 121
           +++P       ++D+L R +    ++++     TE    PN A                 
Sbjct: 70  LKDPKSGSDYKEIDLLHRQLERQARIQRFNDGGTETELNPNLAKR--------------- 114

Query: 122 KAESGTQTGDSGKQSAPSGKRKKVKND-VSEITEADFKLWHDSLFAYQHTMRNNLHQRTR 180
                    + G + AP  KR +   + + ++TEA    + D  F YQ       +QRTR
Sbjct: 115 ---------NEGPKKAP--KRNEFDEEHIEKLTEA----FIDGCFGYQLDWYKAGNQRTR 159

Query: 181 NILKSRQIGATYYFAGEALEQAILTGDNQIFLSASRAQADVFRRYIVAIAKEFLGIEITG 240
            ILKSRQIGATYYFA EAL  A+ TG NQIFLSAS+ QA +F+ YI A A+E +G+E+TG
Sbjct: 160 AILKSRQIGATYYFAREALIDALTTGRNQIFLSASKNQAHIFKAYIQAFAREVVGVELTG 219

Query: 241 NPSTLSNGAELHYLSTNGKTAQSYHGHVYIDEYFWIGKFDELNKVASAMATHKKWRKTYF 300
           +P  L NGAELH+L TN +TAQ YHG+ Y DE+FW  KF ELNKVAS MA  K++R+TYF
Sbjct: 220 DPIILGNGAELHFLGTNARTAQGYHGNFYFDEFFWTFKFKELNKVASGMAMQKQYRRTYF 279

Query: 301 STPSSKMHPAYSFWTGEKWRGDKTTRKNIEFPTFDELRDGGRLCPDKQWRYVVTIEDAAK 360
           STPSS  H AY+FWTGE++   K   + ++          GRLC D+ WR +VTI DA  
Sbjct: 280 STPSSMAHEAYTFWTGERFNKGKPASQRVKIDVSHNALQQGRLCEDRVWRQIVTILDAED 339

Query: 361 GGCDLFDIEELREEYSETDFNNLFMCVFVDGASSIFEFNKIERCMVDS-DIW-QDYKPNA 418
            GCDLFD++ELR+EY    F NL MC F+D  +SIF    ++ CMVDS D+W QDYKP A
Sbjct: 340 RGCDLFDLDELRQEYDAEAFQNLLMCQFIDDGASIFPLAMLQPCMVDSWDLWAQDYKPFA 399

Query: 419 ARPFGSREVWLGYDPSRTRDNAVLMVVAPPIVAVEKFRVLEKHTWRGLSFQHQASEISKV 478
           ARPFG R+VW+GYDP+ + D+A L+V+APP+V   KFRVLEKH +RG+ F  QA  I +V
Sbjct: 400 ARPFGDRQVWVGYDPAESGDSAGLVVIAPPMVPGGKFRVLEKHQFRGMDFAAQAEAIRQV 459

Query: 479 FERFNVTYLGIDITGIGAGVHDLLVNKHPRETVAIHYSNENKNRLVMKMIDIIDGNRLQF 538
            +R+ VTY+GIDITG+G+GV  L+    P  T A  YS E K RLV+K  D+I   RL+F
Sbjct: 460 TKRYWVTYIGIDITGMGSGVAQLVKQFFPNIT-AFSYSPEVKTRLVLKAYDVIKNGRLEF 518

Query: 539 DAGMKETAMAFMAIKRVATNSGNMMTFKAERSEQAGHADDFWALSHALINEPLDHST 595
           DAG  + A + MAI++  T SG   T+ A R+++ GHAD  WA  HAL NEPL+  T
Sbjct: 519 DAGWTDLAQSLMAIRKTITASGRQFTYTAGRTDETGHADLAWATFHALHNEPLEGQT 575