Pairwise Alignments

Query, 605 a.a., terminase from Vibrio cholerae E7946 ATCC 55056

Subject, 676 a.a., terminase family protein from Erwinia tracheiphila SCR3

 Score =  567 bits (1461), Expect = e-166
 Identities = 289/610 (47%), Positives = 392/610 (64%), Gaps = 18/610 (2%)

Query: 3   YSPEIRQAARALYLKAWTPREIADELNLNSDRIIYYWADKFGWRDMLREQTIDEAIANRI 62
           Y  E+   AR+LYLK WT +EIA EL LNS R+IYYWADKFGWR +L E+ ++  I  R 
Sbjct: 7   YPEELVNVARSLYLKRWTAQEIAAELKLNSVRVIYYWADKFGWRCLLSEEDLESVINRRA 66

Query: 63  QTLLEVENPSKPQLDMLDRLINHHVKLKKLRATEQPTQPNEAGTVSAQSGAHNSKSGSPK 122
             L++ +N +  +L  LD+ I+ H KL  + +  +  +   A  + A +   +SK     
Sbjct: 67  AVLVDKQNKNDAELKELDKYIDLHAKL--IVSRHKHAEKMHAMDLEAAARGISSKGADGA 124

Query: 123 AESGTQTGDSGKQSAPSGKRKKVKNDVSEITEADFKLWHDSLFAYQHTMRNNLHQRTRNI 182
            ++    G+        G+R++ +NDVS I EADF  +   LF YQ T+R     R R  
Sbjct: 125 IKAIASEGEENV----GGRRRRKRNDVSGIAEADFTEFVSELFNYQKTLREAKQHRNRIW 180

Query: 183 LKSRQIGATYYFAGEALEQAILTGDNQIFLSASRAQADVFRRYIVAIAKEFLGIEITGNP 242
           LKSRQIGAT+Y A EALE AIL+G+NQ FLSASR Q+ +FRRYIV  A E  GIE+ G+P
Sbjct: 181 LKSRQIGATWYAAFEALEDAILSGNNQAFLSASRPQSLIFRRYIVKFAFELFGIELKGDP 240

Query: 243 STLSNGAELHYLSTNGKTAQSYHGHVYIDEYFWIGKFDELNKVASAMATHKKWRKTYFST 302
             LSNGAELH+LSTN  TAQ +  +VYIDE FW   F EL KVA A+ATH   R+TY ST
Sbjct: 241 IVLSNGAELHFLSTNSNTAQGFCANVYIDEIFWQRGFTELKKVAGAIATHTHLRRTYIST 300

Query: 303 PSSKMHPAYSFWTGEKWRGDKTTRKNIEFPTFDELRDGGRLCPDKQWRYVVTIEDAAKGG 362
           PS+K H AY FWTG++WR  K  R+N+EFP FD+++ G  +CPD  WRY+ T+E A +  
Sbjct: 301 PSAKTHQAYPFWTGDEWRKGKKARENVEFPPFDQMQHGV-MCPDNHWRYITTVETAVRDM 359

Query: 363 CDLFD-----------IEELREEYSETDFNNLFMCVFVDGASSIFEFNKIERCMVDSDIW 411
             + D           +EE++EE S + ++ L+MC FVD    +F F+++E+C+ +   W
Sbjct: 360 LAVADATGDPTRLLINLEEIQEENSHSAYSQLYMCQFVDSGDCVFRFDQLEKCLANISTW 419

Query: 412 QDYKPNAARPFGSREVWLGYDPSRTRDNAVLMVVAPPIVAVEKFRVLEKHTWRGLSFQHQ 471
            D+  NA RPFG+REVW GYDP+RT D A  ++VAPP+   E FRVL   TW G +F++Q
Sbjct: 420 DDHDVNALRPFGNREVWAGYDPARTGDTASFVLVAPPLADGEPFRVLHVETWHGFNFKYQ 479

Query: 472 ASEISKVFERFNVTYLGIDITGIGAGVHDLLVNKHPRETVAIHYSNENKNRLVMKMIDII 531
              I +   R+N+T++GID TGIG  V +++     RE  AIHYS E+KNRLVMKMID++
Sbjct: 480 VGRIREYMSRYNITHIGIDTTGIGGPVFEMVQEFARREATAIHYSLESKNRLVMKMIDVV 539

Query: 532 DGNRLQFDAGMKETAMAFMAIKRVATNSGNMMTFKAERSEQAGHADDFWALSHALINEPL 591
           +  R+ +DA  K  A +FMAI    T SG  MTF A+RS   GHAD F+A++HA+INEP+
Sbjct: 540 EHKRIAWDAEDKGIAASFMAIHHTTTKSGGAMTFVADRSADTGHADKFFAIAHAVINEPI 599

Query: 592 DHSTQRKSTW 601
           ++  +RKS W
Sbjct: 600 NNERRRKSGW 609