Pairwise Alignments

Query, 605 a.a., terminase from Vibrio cholerae E7946 ATCC 55056

Subject, 589 a.a., terminase ATPase subunit family protein from Erwinia tracheiphila SCR3

 Score =  434 bits (1116), Expect = e-126
 Identities = 247/595 (41%), Positives = 350/595 (58%), Gaps = 45/595 (7%)

Query: 8   RQAARALYLKAWTPREIADELNLNSDRIIYYWADKFGWRDMLREQTIDEAIANRIQTLLE 67
           R+ A  LY + ++  +IA+ L +    +   W  + GW  +     ++ ++  R+  L+ 
Sbjct: 14  RRQASLLYWQGFSVPQIAEMLQVKRPTV-QSWKQRDGWDGIAPISRVESSLEARLIQLIA 72

Query: 68  VENPSK---PQLDMLDRLINHHVKLKKLRAT--EQPTQPNEAGTVSAQSGAHNSKSGSPK 122
               S     ++D+L R I    ++ +   T  E    PN A                  
Sbjct: 73  KPQKSGGDFKEIDLLGRQIERLARVNRYSQTGNEVDLNPNVA------------------ 114

Query: 123 AESGTQTGDSGKQSAPSGKRKKVKNDV--SEITEADFKLWHDSLFAYQ-HTMRNNLHQRT 179
                        +   G+RKK K +    E  E   +L+ D  F YQ    R  L  R 
Sbjct: 115 -------------NRNKGERKKPKKNFFSDEAIEKLEELFFDQSFEYQLQWYRAGLAHRI 161

Query: 180 RNILKSRQIGATYYFAGEALEQAILTGDNQIFLSASRAQADVFRRYIVAIAKEFLGIEIT 239
           R+ILKSRQIGAT+YF+ EAL +A+ TG NQIFLSAS+ QA VFR YI+  A+  + +++T
Sbjct: 162 RDILKSRQIGATFYFSREALLRALKTGHNQIFLSASKTQAYVFREYIIQFAR-LVDVDLT 220

Query: 240 GNPSTL-SNGAELHYLSTNGKTAQSYHGHVYIDEYFWIGKFDELNKVASAMATHKKWRKT 298
           G+P  + +NGA+L +L TN  TAQS++G +Y+DE FWI  F +L KVAS MA+ K  R T
Sbjct: 221 GDPIVIGNNGAKLIFLGTNSNTAQSHNGDLYVDEIFWIPNFQKLRKVASGMASQKHLRST 280

Query: 299 YFSTPSSKMHPAYSFWTGEKW-RGDKTTRKNIEFPTFDELRDGGRLCPDKQWRYVVTIED 357
           YFSTPS+  H AY FW+GE + +G       IE         GG+LC D QWR +VTIED
Sbjct: 281 YFSTPSTLAHGAYPFWSGELFNKGRSRITDRIEIDISHSALAGGQLCDDGQWRQIVTIED 340

Query: 358 AAKGGCDLFDIEELREEYSETDFNNLFMCVFVDGASSIFEFNKIERCMVD-SDIWQDYKP 416
           A  GGC LFD+++L+ E S+ DF NLFMC FVD  +S+F F +++RCMVD  + W+D+ P
Sbjct: 341 ALAGGCTLFDLDQLKCENSDEDFKNLFMCEFVDDKASVFPFEELQRCMVDVMEEWEDFAP 400

Query: 417 NAARPFGSREVWLGYDPSRTRDNAVLMVVAPPIVAVEKFRVLEKHTWRGLSFQHQASEIS 476
            A  PFGSR VW+GYDPS T D+A  +V+APP+V+  KFR+LE+H W+G+ F  QA  I 
Sbjct: 401 FADHPFGSRPVWIGYDPSHTGDSAGCVVLAPPVVSGGKFRMLERHQWKGMDFAAQAEGIR 460

Query: 477 KVFERFNVTYLGIDITGIGAGVHDLLVNKHPRETVAIHYSNENKNRLVMKMIDIIDGNRL 536
           K+ E++NV Y+GID TG+G GV  L+ + +P     I Y+ E K  +V+K  D I    L
Sbjct: 461 KLTEKYNVEYIGIDATGLGLGVFQLVRSFYPAAR-GIRYTPEMKTAMVLKAKDTIRRGCL 519

Query: 537 QFDAGMKETAMAFMAIKRVATNSGNMMTFKAERSEQAGHADDFWALSHALINEPL 591
           ++DAG  +   +FM+I++  T+SG   T++A R+E+A HAD  WA  HAL+NEPL
Sbjct: 520 EYDAGATDVTQSFMSIRKTMTSSGRSATYEASRTEEASHADIAWATMHALLNEPL 574