Pairwise Alignments

Query, 605 a.a., terminase from Vibrio cholerae E7946 ATCC 55056

Subject, 576 a.a., terminase family protein from Erwinia tracheiphila SCR3

 Score =  338 bits (868), Expect = 3e-97
 Identities = 215/598 (35%), Positives = 313/598 (52%), Gaps = 54/598 (9%)

Query: 7   IRQAARALYLKAWTPREIADELNLNSDRIIYYWADKFGWRDMLREQTIDEAIANRIQTLL 66
           +RQ A+ LY + + P EIA  + +N + I Y W  +  W +    Q + +++  R+  L 
Sbjct: 7   VRQRAKQLYWQGYPPAEIARLMGINQNTI-YAWKKRDEWDETPPVQRVSQSMDARLIQLT 65

Query: 67  EVENPSKPQLDMLDRLINHHVKLKKLRATEQPTQPNEAGTVSAQSGAHNSKSGSPKAESG 126
           + ++ +      +D L     +LKKL                                S 
Sbjct: 66  DKKDKTGGDFKEIDLLTR---QLKKL--------------------------------SD 90

Query: 127 TQTGDSGKQSAPSGKRKKVKNDVSE--ITEADFKLWHDSLFAYQHTMRNNLHQRTRNILK 184
            Q   +G    P  +++K+KN  +E  I     K+   SL  +Q   +    QR R +LK
Sbjct: 91  GQLAGAGTGKKP--RQRKLKNHFTEEQIVALREKITA-SLAQHQRKWQEQQDQRNRMLLK 147

Query: 185 SRQIGATYYFAGEALEQAILTG------DNQIFLSASRAQADVFRRYIVAIAKEFLGIEI 238
           +RQ GAT+YFA EAL +A+          NQIFLSASR QA  FR +I  +A E + +E+
Sbjct: 148 TRQCGATWYFAREALLRALRDDVEYSYQRNQIFLSASRRQAHQFRGFIQKVAGE-VDVEL 206

Query: 239 TGNPS-TLSNGAELHYLSTNGKTAQSYHGHVYIDEYFWIGKFDELNKVASAMATHKKWRK 297
            G     LSNGAELH+L T+  TAQSY G++Y DE+FW+  F +L KVA AMAT K   +
Sbjct: 207 KGGDKIVLSNGAELHFLGTSAATAQSYTGNLYFDEFFWVSHFTKLRKVAGAMATMKGLTR 266

Query: 298 TYFSTPSSKMHPAYSFWTGEKWRGDKTTRKNIEFPTFDELRDGGRLCPDKQWRYVVTIED 357
           TYFSTPSS+ H AY FWTG++W   +   +   F    +  + G LCPDK WR +VT++D
Sbjct: 267 TYFSTPSSETHEAYPFWTGDRWNEKRPKVQRKAFDVGWKTLNSGLLCPDKTWRQIVTLKD 326

Query: 358 AAKGGCDLFDIEELREEYSETDFNNLFMCVFVDGASSIFEFNKIERCMVDS-DIWQDYKP 416
               G +  ++EE+++E SE +F NL+MC FV    S F  N +  C  D  D W D+KP
Sbjct: 327 IIDQGWEYTNLEEIQDENSEDEFRNLYMCEFVRDGESAFNLNALIGCGADGYDEWPDWKP 386

Query: 417 NAARPFGSREVWLGYD---PSRTRDNAVLMVVAPPIVAVEKFRVLEKHTWRGLSFQHQAS 473
            A+RP G+R VW+GYD    S   D+  + VV PP+V   +FR +E    RG  F+ QA 
Sbjct: 387 FASRPMGNRPVWIGYDANGSSGNGDSGAICVVVPPLVPGGRFRTVETEQVRGFEFEEQAK 446

Query: 474 EISKVFERFNVTYLGIDITGIGAGVHDLLVNKHPRETVAIHYSNENKNRLVMKMIDIIDG 533
            I     ++NV ++GID+TG        +V K     +    S  +K  LV+KM+ +I  
Sbjct: 447 VIENFTFKYNVQHVGIDVTGGNGEAVYQIVKKFFPMAMPWTMSMTSKRTLVLKMLQLIRA 506

Query: 534 NRLQFDAGMKETAMAFMAIKRVATNSGNMMTFKAERSEQAGHADDFWALSHALINEPL 591
            R ++D   +    AF ++++V T  G  +T+  +RS    H D  WA   A+INEPL
Sbjct: 507 GRWEYDRSERALINAFNSVRKVKT-PGGFITYDTDRSRGVSHGDLAWANMLAIINEPL 563