Pairwise Alignments

Query, 605 a.a., terminase from Vibrio cholerae E7946 ATCC 55056

Subject, 588 a.a., Terminase, ATPase subunit from Escherichia coli BL21

 Score =  461 bits (1185), Expect = e-134
 Identities = 263/605 (43%), Positives = 360/605 (59%), Gaps = 48/605 (7%)

Query: 8   RQAARALYLKAWTPREIADELNLNSDRIIYYWADKFGWRDM--LREQTIDEAIANRIQTL 65
           R+ A  LY + +    IA+ L       ++ W  +  W D   L +  +  A A   Q +
Sbjct: 13  RRQAMLLYFQGYRVARIAEMLG-EKVATVHSWKKRDKWGDYGPLDQMQLTTA-ARYCQLI 70

Query: 66  LEVENPSKP--QLDMLDRLINHHVKLKKLRATEQPTQPNEAGTVSAQSGAHNSKSGSPKA 123
           ++     K   ++D+L R    H ++ K                          +G  +A
Sbjct: 71  MKEHKEGKDFKEIDLLARQSERHARIGKFN------------------------NGGNEA 106

Query: 124 ESGTQTGDSGKQSAPSGKRKKVKNDV--SEITEADFKLWHDSLFAYQ-HTMRNNLHQRTR 180
           +      +  K     G R++ + +V   E  E   +++H S+F YQ H        R R
Sbjct: 107 DLNPNVANRNK-----GPRRQPEKNVFTDEQIEKLEEIFHSSMFNYQRHWWEAGKTNRIR 161

Query: 181 NILKSRQIGATYYFAGEALEQAILTGDNQIFLSASRAQADVFRRYIVAIAKEFLGIEITG 240
           N+LKSRQIGAT+YFA EAL  A+LTG NQIFLSAS+AQA VF++YI+  AKE + +E+ G
Sbjct: 162 NLLKSRQIGATFYFAREALIDALLTGRNQIFLSASKAQAHVFKQYIIDFAKE-VEVELKG 220

Query: 241 NPSTLSNGAELHYLSTNGKTAQSYHGHVYIDEYFWIGKFDELNKVASAMATHKKWRKTYF 300
           +P  L NGA L++L TN +TAQSYHG++Y+DEYFWI KF EL KVAS MA HKKWR+TYF
Sbjct: 221 DPIVLPNGATLYFLGTNARTAQSYHGNLYLDEYFWIPKFQELRKVASGMAIHKKWRQTYF 280

Query: 301 STPSSKMHPAYSFWTGEKWRGDKTTRKNIEFPTFDELRDGGRLCPDKQWRYVVTIEDAAK 360
           STPSS  H AY FW+G  +   +     ++          G LC D Q+R +VT+EDA +
Sbjct: 281 STPSSLTHSAYPFWSGALFNRGRNKADKVDIDLSHSNLAPGLLCTDGQYRQIVTVEDAVR 340

Query: 361 GGCDLFDIEELREEYSETDFNNLFMCVFVDGASSIFEFNKIERCMVDS-DIWQDYKPNAA 419
           GGC+LFD+++LR EYS  ++ NL MC FVD  +S+F  ++++ CMVDS +IW D+   A 
Sbjct: 341 GGCNLFDLDQLRMEYSPDEYQNLLMCEFVDDLASVFPLSELQACMVDSWEIWTDFHALAL 400

Query: 420 RPFGSREVWLGYDPSR---TRDNAVLMVVAPPIVAVEKFRVLEKHTWRGLSFQHQASEIS 476
           RPFG REVW+GYDP++     D+A  +VVAPP V   KFR+LE+H WRG+ F+ QA  I 
Sbjct: 401 RPFGWREVWIGYDPAKGTQNGDSAGCVVVAPPAVPGGKFRILERHQWRGMDFRAQADAIK 460

Query: 477 KVFERFNVTYLGIDITGIGAGVHDLLVNKHP--RETVAIHYSNENKNRLVMKMIDIIDGN 534
           K+ E++NVTY+GID TG+G GV++ +    P  RE V   Y+   KN LV+K  DII   
Sbjct: 461 KLTEQYNVTYIGIDSTGVGHGVYENVKAFFPAVREFV---YNPNVKNALVLKAYDIISHR 517

Query: 535 RLQFDAGMKETAMAFMAIKRVATNSGNMMTFKAERSEQAGHADDFWALSHALINEPLDHS 594
           RL+FDAG  + A +FMAI+R  T SGN  T++A RSE+A HAD  WA  HAL NEPL   
Sbjct: 518 RLEFDAGHTDIAQSFMAIRRATTASGNRPTYEASRSEEASHADLAWATMHALFNEPLQGE 577

Query: 595 TQRKS 599
           +   S
Sbjct: 578 SANTS 582