Pairwise Alignments

Query, 299 a.a., capsid protein from Vibrio cholerae E7946 ATCC 55056

Subject, 280 a.a., GPO family capsid scaffolding protein from Variovorax sp. OAS795

 Score =  100 bits (249), Expect = 4e-26
 Identities = 60/138 (43%), Positives = 81/138 (58%), Gaps = 3/138 (2%)

Query: 1   MPKTSDWVIVATAGTTVSDGRVISESWINDMAELYDPEEYKALIWPEHYRSAWAVFEGKN 60
           M K S    VAT G T +DGR I  SWI  MA  +DP++Y A +W EH R  +     K 
Sbjct: 1   MAKKSKMFRVATEGAT-TDGRRIERSWIEQMARNFDPKKYGARVWLEHMRGIYPDSSFKA 59

Query: 61  WGEVEELKAGKFKD-KLRLFAKLTPNHYLLE-ANKDGQKLFSSIEPEPDYKKEGRCYLLG 118
           +G+V  ++A   +D KL LF ++ P   L+    +D QK+++SIE  P +   G  YL+G
Sbjct: 60  YGDVLSVEARAVEDGKLALFTEIAPLPDLVAMTTRDKQKIYTSIEVNPKFADTGEAYLVG 119

Query: 119 LAVTDSPASSGTTRLRFS 136
           LAVTDSPAS GT  L F+
Sbjct: 120 LAVTDSPASLGTEVLSFA 137