Pairwise Alignments

Query, 299 a.a., capsid protein from Vibrio cholerae E7946 ATCC 55056

Subject, 316 a.a., GPO family capsid scaffolding protein from Erwinia tracheiphila SCR3

 Score =  124 bits (311), Expect = 3e-33
 Identities = 101/283 (35%), Positives = 143/283 (50%), Gaps = 27/283 (9%)

Query: 4   TSDWVIVATAGTTVSDGRVISESWINDMAELYDPEEYKALIWPEHYRSAWAVFEGKNWGE 63
           T+ ++ +AT G TV DGR I   W+ DMAE YDP  Y ALIWPEH R  W      + GE
Sbjct: 7   TTSFIRIATEGKTV-DGRRIEAQWLVDMAESYDPNVYTALIWPEHER-WWG-----SHGE 59

Query: 64  VEELKAGKFKDKLRLFAKLTPNHYLLEANKDGQKLFSSIEPEP--DYKKEGRCYLLGLAV 121
           V+ELKA +    +RL+A+L P+  L+ AN+ GQ LF SIEP    D+   G+ YL GL V
Sbjct: 60  VQELKAEEEDGLMRLYARLCPSMDLMSANRQGQLLFCSIEPSETLDFCDTGKPYLEGLGV 119

Query: 122 TDSPASSGTTRLRFS-----RVQGQYTELECS-ALEEWDLTPFYSQNAEFSKFFAMCRSF 175
           T SPAS GT RLRFS     R  G +  L  S      DL      N      F   RS 
Sbjct: 120 TSSPASIGTERLRFSSQRDGRSYGNWEPLVISDVANTQDLFMSAKDNKSKKTLF---RSL 176

Query: 176 FN-REQPNETNQPQSEDEEPMKQEQFDQMMGAI-NGIATKQNELESKFNTFSAQKPE-TK 232
           FN  E+  E  Q +S       ++  D+ + A+   +A  Q+ +E +  T   Q    T+
Sbjct: 177 FNIPEKAQEKKQDKSRSRVFSGRKFSDEDVQALAEAVAELQDTVEEQTATIEEQSTVITE 236

Query: 233 GEEPEGDGKDKETNGMTPEQFSKLTETLDSIAQKQADLETKFT 275
            +E   D  +        E   ++ E+L+S+ ++  +++ + T
Sbjct: 237 LKENAADVTE------IKEAVDEVKESLESVQEEVTEIKDEVT 273