Pairwise Alignments

Query, 299 a.a., capsid protein from Vibrio cholerae E7946 ATCC 55056

Subject, 284 a.a., GPO family capsid scaffolding protein from Erwinia tracheiphila SCR3

 Score =  105 bits (261), Expect = 2e-27
 Identities = 95/307 (30%), Positives = 134/307 (43%), Gaps = 51/307 (16%)

Query: 3   KTSDWVIVATAGTTVSDGRVISESWINDMAELYDPEEYKALIWPEHYRSAWAVFEGKNWG 62
           K S +  +   G T  DGR+IS S I +MAE YD   Y   I  EH R        K +G
Sbjct: 4   KVSKFFRIGVEGDTC-DGRIISASDIQEMAETYDSRVYGCRINLEHLRGLLPDGVFKRYG 62

Query: 63  EVEELKAGKFKD------KLRLFAKLTPNHYLLEANKDGQKLFSSIEPEPDYKKEGRCYL 116
           +V ELKA K  D      K  LFAK+TP   L+  NK  QK+++S+E +P++   G+CYL
Sbjct: 63  DVVELKAEKIDDDSALNGKWALFAKITPTDDLIAMNKAAQKVYTSMEIQPNFANTGKCYL 122

Query: 117 LGLAVTDSPASSGTTRLRFSR-------------VQGQYTELECSALEEWDLTPFYSQNA 163
           +GLAVTD PAS GT  L F R              +  ++    + LE  D+      + 
Sbjct: 123 VGLAVTDDPASLGTEYLEFCRNAKHNPLQRFKANPENVFSAATLAELEFEDV-----PDT 177

Query: 164 EFSKFFAMCRSFFNREQPNETNQPQSEDEEPMKQEQFDQMMGAINGIATKQNELESKFNT 223
             +      ++ F+R+Q ++  +     E      +  Q         TKQ+E  S   T
Sbjct: 178 VLNSLADKVKAIFSRKQVSDDARLNDVHEAVTTVSEHVQTN------LTKQDERLSAMET 231

Query: 224 -FSAQKPETKGEEPEGDGKDKETNGMTPEQFSKLTETLDSIAQKQADLETKFTQLSQTGP 282
            F+  K E  G+  E           T + FS L  TLD            F+Q  +T  
Sbjct: 232 AFATFKQELTGKVDE-----------TSQAFSALKTTLDK--------TESFSQPRRTKA 272

Query: 283 DGQGADK 289
            G G D+
Sbjct: 273 SGGGGDE 279