Pairwise Alignments

Query, 299 a.a., capsid protein from Vibrio cholerae E7946 ATCC 55056

Subject, 278 a.a., GPO family capsid scaffolding protein from Erwinia tracheiphila SCR3

 Score = 94.0 bits (232), Expect = 4e-24
 Identities = 67/231 (29%), Positives = 107/231 (46%), Gaps = 35/231 (15%)

Query: 10  VATAGTTVSDGRVISESWINDMAELYDPEEYKALIWPEHYRSAWAVFEGKNWGEV----- 64
           VA +G TV DGR I    + D A  Y P+ Y A +  EHY S    F G ++G +     
Sbjct: 14  VAVSGATV-DGREIRPEHLRDAAANYSPDVYGARVNVEHYLSP---FPGSDFGAMGDVTA 69

Query: 65  ---EELKAGKFKDKLRLFAKLTPNHYLLEANKDGQKLFSSIEPEPDYKKEGRCYLLGLAV 121
              E++  G    +  L+A++ P+  + +   +G+K++SSIE  P +   GR Y++GLA+
Sbjct: 70  LSAEDISEGPLAGRTALYAEIEPSERMKKLTDEGKKIYSSIELHPQFALNGRAYVMGLAM 129

Query: 122 TDSPASSGTTRLRFSRVQGQY----------TELECSALEEWDLTPFYSQNAEFSKFFAM 171
           TD+PAS GT RL+F+  Q Q             L   A+E   +     +N E  ++F  
Sbjct: 130 TDTPASLGTERLKFAAQQRQQVMSFNNQQGEAPLFTDAIEAEIIELAEQRNDEGKQWFGR 189

Query: 172 CRSFFNREQPNETNQPQSEDEEPMKQEQFDQMMGAINGIATKQNELESKFN 222
                 + + ++              EQF Q+  A+  +A    +L   FN
Sbjct: 190 VMGIIGKGRKSD-------------GEQFSQVRDAVENVAQSHADLLDSFN 227