Pairwise Alignments

Query, 299 a.a., capsid protein from Vibrio cholerae E7946 ATCC 55056

Subject, 284 a.a., Capsid assembly scaffolding protein from Escherichia coli ECRC98

 Score =  103 bits (258), Expect = 3e-27
 Identities = 63/141 (44%), Positives = 80/141 (56%), Gaps = 7/141 (4%)

Query: 3   KTSDWVIVATAGTTVSDGRVISESWINDMAELYDPEEYKALIWPEHYRSAWAVFEGKNWG 62
           K S +  +   G T  DGRVIS   I +MAE +DP  Y   I  EH R        K +G
Sbjct: 4   KVSKFFRIGVEGDTC-DGRVISAQDIQEMAETFDPRVYGCRINLEHLRGILPDGIFKRYG 62

Query: 63  EVEELKAGKFKD------KLRLFAKLTPNHYLLEANKDGQKLFSSIEPEPDYKKEGRCYL 116
           +V ELKA K  D      K  LFAK+TP   L+  NK  QK+++S+E +P++   G+CYL
Sbjct: 63  DVVELKAEKIDDDSALKGKWALFAKITPTDDLIAMNKAAQKVYTSMEIQPNFANTGKCYL 122

Query: 117 LGLAVTDSPASSGTTRLRFSR 137
           +GLAVTD PAS GT  L F R
Sbjct: 123 VGLAVTDDPASLGTEYLEFCR 143