Pairwise Alignments

Query, 299 a.a., capsid protein from Vibrio cholerae E7946 ATCC 55056

Subject, 278 a.a., phage capsid scaffolding protein from Dickeya dianthicola ME23

 Score =  133 bits (335), Expect = 4e-36
 Identities = 103/284 (36%), Positives = 140/284 (49%), Gaps = 33/284 (11%)

Query: 5   SDWVIVATAGTTVSDGRVISESWINDMAELYDPEEYKALIWPEHYRSAWAVFEGKNWGEV 64
           ++W+ +AT G TV D RV+   W+ D AE YDP+ Y ALIWPEH    W      N GEV
Sbjct: 6   TNWICIATEGETV-DKRVMERQWLIDAAETYDPQLYTALIWPEH--ETWF----GNAGEV 58

Query: 65  EELKAGKFKDKL-RLFAKLTPNHYLLEANKDGQKLFSSIEPEPD--YKKEGRCYLLGLAV 121
             LKA    D L RLFA+L PNH LL+AN++GQ LF S+E  PD  ++  G+ YL GL V
Sbjct: 59  LALKAENGDDGLLRLFAQLRPNHQLLQANREGQLLFCSVELTPDGNFRGTGKTYLEGLGV 118

Query: 122 TDSPASSGTTRLRFS-----RVQGQYTELECSALEEWDLTPFYSQNAEFSKFFAMCRSFF 176
           T++PAS GTTRLRFS     R+ G    L    ++E       S++   S F    ++F 
Sbjct: 119 TNTPASVGTTRLRFSSKKRGRLFGALKPLVIDEVKEIKGNSMASKSWH-SLFGIKPKAF- 176

Query: 177 NREQPNETNQPQSEDEEPMKQEQFDQMMGAINGIATKQNELESKFNTFSAQKPE-TKGEE 235
             E   E+N    +D+              +  +A    ELES+     +Q+ + T   E
Sbjct: 177 -AEGEGESNDAGGDDK--------------LQALAEALAELESRVTALESQQSQTTDAVE 221

Query: 236 PEGDGKDKETNGMTPEQFSKLTETLDSIAQKQADLETKFTQLSQ 279
              D  D     +  E F+ L   L  I      L+   T+L Q
Sbjct: 222 AVQDDMDTVKEVVDTEDFATLRNNLPKILNNFGKLDRSITKLPQ 265