Pairwise Alignments

Query, 238 a.a., terminase from Vibrio cholerae E7946 ATCC 55056

Subject, 249 a.a., terminase endonuclease subunit from Erwinia tracheiphila SCR3

 Score = 52.4 bits (124), Expect = 8e-12
 Identities = 45/177 (25%), Positives = 74/177 (41%), Gaps = 4/177 (2%)

Query: 4   SPAARHKLAVLATPAAAAHAAAAESLDSLHLRLVEFEQDKQVLKGFVQISEKVNHKRDVL 63
           SPA RH + V A+ AA    A      +    LV+   D++ LK       K   KR+ L
Sbjct: 3   SPAQRHMMRVSASQAAQREQAPLRHATAYEQMLVKLADDRRTLKTIRSNELKAAKKRE-L 61

Query: 64  IPKYKPLAEKYLAAGESYQNPIFTDLIVWLFDIGDLETAVEWLFKAIELNLPTPENFKRS 123
           +P Y P     LA G   Q+ I   +++W  D GD+  A+E    A++  L +     R 
Sbjct: 62  LPFYAPWVAGVLADGRGAQDDILMTVMLWRLDAGDVAGALEIAPYALKYGLTSDH---RR 118

Query: 124 SWAVICADEVLKWAEQQLPNGHSIEPYFSRVFEKIDKEWKLPEKLEAKWYKFAGYGL 180
           +   +  +EV   A +    G  ++         +     +P+ + A+ +K  G  L
Sbjct: 119 TTPYMLVEEVALAALRLRDAGEPVDLALLLTTLSLTGGADVPDMVRARLHKVTGLTL 175