Pairwise Alignments

Query, 377 a.a., flagellin C from Vibrio cholerae E7946 ATCC 55056

Subject, 495 a.a., Flagellar biosynthesis protein FliC from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  150 bits (379), Expect = 7e-41
 Identities = 141/500 (28%), Positives = 213/500 (42%), Gaps = 130/500 (26%)

Query: 1   MAVNVNTNVSAMTAQRYLTSATNAQQSSMERLSSGYKINSAKDDAAGLQISNRLNVQSRG 60
           MA  +NTN  ++  Q  L  + +A  +++ERLSSG +INSAKDDAAG  I+NR     +G
Sbjct: 1   MAQVINTNSLSLLTQNNLNKSQSALGTAIERLSSGLRINSAKDDAAGQAIANRFTANIKG 60

Query: 61  LGVAVRNANDGISMAQTAEGAMKETTNILQRMRDLSLQSANGSNSKADRVAIQEEITALN 120
           L  A RNANDGIS+AQT EGA+ E  N LQR+R+L++QSAN +NS++D  +IQ EIT   
Sbjct: 61  LTQASRNANDGISIAQTTEGALNEINNNLQRVRELAVQSANSTNSQSDLDSIQAEITQRL 120

Query: 121 DELNRVAETTSFGGNKLLNGTFATKSFQIGADNGEAVMLNIKDMRSDNALMGGKTYQAAN 180
           +E++RV+  T F G K+L     T + Q+GA++GE + +++K + S    +     Q   
Sbjct: 121 NEIDRVSGQTQFNGVKVL-AQDNTLTIQVGANDGETIDIDLKQINSQTLGLDTLNVQQKY 179

Query: 181 GKDKNWGVEAGKTDLTITLK---------------------------------------- 200
                     G  D TI L                                         
Sbjct: 180 KVSDTAATVTGYADTTIALDNSTFKASATGLGGTDQKIDGDLKFDDTTGKYYAKVTVTGG 239

Query: 201 -----------DKREGDVTIS----------INAKEGDDIEELATYINGQTDMIKASVDE 239
                      DK  G+VT++          + A   +D++ +    N      KA++  
Sbjct: 240 TGKDGYYEVSVDKTNGEVTLAGGATSPLTGGLPATATEDVKNVQV-ANADLTEAKAALTA 298

Query: 240 EGKL-------QLFTDNNRIDGAATFGGALAGELG---IGAAQD----VTVDTLDVTT-- 283
            G           +TDNN      T  G LA ++G     A Q+    ++++T   T   
Sbjct: 299 AGVTGTASVVKMSYTDNN----GKTIDGGLAVKVGDDYYSATQNKDGSISINTTKYTADD 354

Query: 284 ---------VGGAQESVAIVDAALKYVDSHRAELGAFQ-----------------NRFNH 317
                    +GGA     +V    K   + +AE   F+                  + + 
Sbjct: 355 GTSKTALNKLGGADGKTEVVSIGGKTYAASKAEGHNFKAQPDLAEAAATTTENPLQKIDA 414

Query: 318 AINNLDNINENVNASKSRIKD--TDFAKETTALTKA-------------------QILSQ 356
           A+  +D +  ++ A ++R     T+       LT A                   QIL Q
Sbjct: 415 ALAQVDTLRSDLGAVQNRFNSAITNLGNTVNNLTSARSRIEDSDYATEVSNMSRAQILQQ 474

Query: 357 ASSSVLAQAKQAPNSALALL 376
           A +SVLAQA Q P + L+LL
Sbjct: 475 AGTSVLAQANQVPQNVLSLL 494