Pairwise Alignments

Query, 377 a.a., flagellin C from Vibrio cholerae E7946 ATCC 55056

Subject, 498 a.a., flagellin (NCBI) from Escherichia coli BW25113

 Score =  140 bits (353), Expect = 8e-38
 Identities = 106/299 (35%), Positives = 154/299 (51%), Gaps = 31/299 (10%)

Query: 1   MAVNVNTNVSAMTAQRYLTSATNAQQSSMERLSSGYKINSAKDDAAGLQISNRLNVQSRG 60
           MA  +NTN  ++  Q  +    +A  SS+ERLSSG +INSAKDDAAG  I+NR     +G
Sbjct: 1   MAQVINTNSLSLITQNNINKNQSALSSSIERLSSGLRINSAKDDAAGQAIANRFTSNIKG 60

Query: 61  LGVAVRNANDGISMAQTAEGAMKETTNILQRMRDLSLQSANGSNSKADRVAIQEEITALN 120
           L  A RNANDGIS+AQT EGA+ E  N LQR+R+L++Q+  G+NS++D  +IQ+EI +  
Sbjct: 61  LTQAARNANDGISVAQTTEGALSEINNNLQRVRELTVQATTGTNSESDLSSIQDEIKSRL 120

Query: 121 DELNRVAETTSFGGNKLL--NGTFATKSFQIGADNGEAVMLNIKDMRSDNALMGGKTYQA 178
           DE++RV+  T F G  +L  NG+      Q+GA++ + + +++K +  D   +G   +  
Sbjct: 121 DEIDRVSGQTQFNGVNVLAKNGSM---KIQVGANDNQTITIDLKQI--DAKTLGLDGFSV 175

Query: 179 ANGKDKNWGVEAGKTDLTITLKDKREGDVTISINAKEGDDIEELATYINGQTDMIKASVD 238
            N               T T   K  G +T+S          E AT   G      AS++
Sbjct: 176 KNNDTVTTSAPVTAFGATTTNNIKLTG-ITLS---------TEAATDTGGTN---PASIE 222

Query: 239 EEGKLQLFTDNNRIDGAATFGGALAGE-LGIGAAQDVTVDTLDVTTVGGAQESVAIVDA 296
                 ++TDN     A   GG   G+   +  A D T     VT   GA  +  + DA
Sbjct: 223 -----GVYTDNGNDYYAKITGGDNDGKYYAVTVANDGT-----VTMATGATANATVTDA 271