Pairwise Alignments

Query, 377 a.a., flagellin C from Vibrio cholerae E7946 ATCC 55056

Subject, 274 a.a., Bacterial flagellin N-terminal helical region/Bacterial flagellin C-terminal helical region from Enterobacter asburiae PDN3

 Score =  159 bits (403), Expect = 7e-44
 Identities = 83/175 (47%), Positives = 124/175 (70%), Gaps = 4/175 (2%)

Query: 1   MAVNVNTNVSAMTAQRYLTSATNAQQSSMERLSSGYKINSAKDDAAGLQISNRLNVQSRG 60
           MAV +NTN+ ++T Q  L  + ++  +++ERLSSG +INSAKDDAAG  I+NR+  Q +G
Sbjct: 1   MAV-INTNLMSLTTQNNLNKSQSSLGTAIERLSSGLRINSAKDDAAGQAIANRMTSQIKG 59

Query: 61  LGVAVRNANDGISMAQTAEGAMKETTNILQRMRDLSLQSANGSNSKADRVAIQEEITALN 120
           +  A RNANDGISMAQTAEG++ E  N LQR+R+L++Q++NG+NS +D  ++Q+E+TA  
Sbjct: 60  MTQAARNANDGISMAQTAEGSLNEINNNLQRVRELAVQASNGTNSTSDLASLQDEVTARL 119

Query: 121 DELNRVAETTSFGGNKLLNGTFATK---SFQIGADNGEAVMLNIKDMRSDNALMG 172
            E+NRVA  T F G KLL+GT  T      Q+G ++G+ + L++   ++D   +G
Sbjct: 120 AEINRVAGKTDFNGIKLLDGTAGTAGKVKIQVGVNDGDTIDLDLSGAKADTTTLG 174



 Score = 97.8 bits (242), Expect = 3e-25
 Identities = 74/225 (32%), Positives = 112/225 (49%), Gaps = 31/225 (13%)

Query: 173 GKTYQAANGKDKNWGVEAGKT------DLTITLKDKREGDVTISINAKEGDDIEELATYI 226
           G T  A N  D   G+   +T      ++   L+  RE  V  S       D+  L    
Sbjct: 59  GMTQAARNAND---GISMAQTAEGSLNEINNNLQRVRELAVQASNGTNSTSDLASLQ--- 112

Query: 227 NGQTDMIKASVDEEGKLQLFTDNNRI---DGAATFGGALAGELGIGAAQDVTVDT----L 279
               D + A + E  ++   TD N I   DG A   G +  ++G+     + +D      
Sbjct: 113 ----DEVTARLAEINRVAGKTDFNGIKLLDGTAGTAGKVKIQVGVNDGDTIDLDLSGAKA 168

Query: 280 DVTTVGG--------AQESVAIVDAALKYVDSHRAELGAFQNRFNHAINNLDNINENVNA 331
           D TT+G             +  +D A+  VD+ R+ LGA QNRF  AINNL+N + N++A
Sbjct: 169 DTTTLGVNAIDLKAMTATDLDTIDKAIAKVDTARSGLGAVQNRFTSAINNLNNTSNNLSA 228

Query: 332 SKSRIKDTDFAKETTALTKAQILSQASSSVLAQAKQAPNSALALL 376
           ++SRI+D D+A E + +++AQIL QA +SVL+QA Q P + L+LL
Sbjct: 229 AQSRIQDADYATEVSNMSRAQILQQAGTSVLSQANQVPQTVLSLL 273