Pairwise Alignments

Query, 377 a.a., flagellin C from Vibrio cholerae E7946 ATCC 55056

Subject, 585 a.a., flagellin FliC from Escherichia coli ECRC101

 Score =  151 bits (381), Expect = 5e-41
 Identities = 114/339 (33%), Positives = 167/339 (49%), Gaps = 41/339 (12%)

Query: 1   MAVNVNTNVSAMTAQRYLTSATNAQQSSMERLSSGYKINSAKDDAAGLQISNRLNVQSRG 60
           MA  +NTN  ++  Q  +    +A  SS+ERLSSG +INSAKDDAAG  I+NR     +G
Sbjct: 1   MAQVINTNSLSLITQNNINKNQSALSSSIERLSSGLRINSAKDDAAGQAIANRFTSNIKG 60

Query: 61  LGVAVRNANDGISMAQTAEGAMKETTNILQRMRDLSLQSANGSNSKADRVAIQEEITALN 120
           L  A RNANDGIS+AQT EGA+ E  N LQR+R+L++Q+  G+NS +D  +IQ+EI +  
Sbjct: 61  LTQAARNANDGISVAQTTEGALSEINNNLQRIRELTVQATTGTNSDSDLDSIQDEIKSRL 120

Query: 121 DELNRVAETTSFGGNKLLNGTFATKSFQIGADNGEAVMLNIKDMRSDNALMGG------- 173
           DE++RV+  T F G  +L    + K  Q+GA++GE + +++K + SD   + G       
Sbjct: 121 DEIDRVSGQTQFNGVNVLAKDGSMK-IQVGANDGETITIDLKKIDSDTLGLNGFNVNGKG 179

Query: 174 -KTYQAANGKD---------KNWGVEAGKTDLTITLKDK-----------REGDVTISIN 212
             T +AA   D            G+   KT+ T+   D              G V  + N
Sbjct: 180 TITNKAATVSDLTSAGAKLNTTTGLYDLKTENTLLTTDAAFDKLGNGDKVTVGGVDYTYN 239

Query: 213 AKEGD------------DIEELATYINGQTDMIKASVDEEGKLQLFTDNNRIDGAATFGG 260
           AK GD            D    A     + D + A++  +    +       DG  +F  
Sbjct: 240 AKSGDFTTTKSTAGTGVDAAAQAADSASKRDALAATLHADVGKSVNGSYTTKDGTVSFET 299

Query: 261 ALAGELGIGAAQDVTVDTLDVTTVGGAQESVAIVDAALK 299
             AG + IG +Q    D  ++TT      + A + A LK
Sbjct: 300 DSAGNITIGGSQAYVDDAGNLTTNNAGSAAKADMKALLK 338



 Score =  100 bits (248), Expect = 1e-25
 Identities = 85/295 (28%), Positives = 132/295 (44%), Gaps = 57/295 (19%)

Query: 102 GSNSKADRVAIQEEITALNDELNRVAETTSFGGNKLLNGTFATKSFQIGADNGEAVMLNI 161
           GS +KAD  A           L + A   S G +   NGT  T +    A       L  
Sbjct: 326 GSAAKADMKA-----------LLKAASEGSDGASLTFNGTEYTIAKATPATTTPVAPL-- 372

Query: 162 KDMRSDNALMGGKTYQAANGKDKNWGVEAGKTDLTITLKDKREGDVTISINAKEGDDIEE 221
                   + GG TYQA   KD             + L + +    T SI    G   + 
Sbjct: 373 --------IPGGITYQATVSKD-------------VVLSETKAAAATSSITFNSGVLSKT 411

Query: 222 LATYINGQTDMIKASVDEEGKLQLFTDN------NRIDGAATFGG-------------AL 262
           +       +D  K+ VD++G +    D       N+ +G+ T  G             A+
Sbjct: 412 IGFTAGESSDAAKSYVDDKGGITNVADYTVSYSVNKDNGSVTVAGYASATDTNKDYAPAI 471

Query: 263 AGELGIGAAQDVTVDTLDVTTVGGAQES-VAIVDAALKYVDSHRAELGAFQNRFNHAINN 321
              + + +A  +T +T   T+ G A  + +A +D A+  +D  R+ LGA QNR + A+ N
Sbjct: 472 GTAVNVNSAGKITTET---TSAGSATTNPLAALDDAISSIDKFRSSLGAIQNRLDSAVTN 528

Query: 322 LDNINENVNASKSRIKDTDFAKETTALTKAQILSQASSSVLAQAKQAPNSALALL 376
           L+N   N++ ++SRI+D D+A E + ++KAQI+ QA +SVLA+A Q P   L+LL
Sbjct: 529 LNNTTTNLSEAQSRIQDADYATEVSNMSKAQIIQQAGNSVLAKANQVPQQVLSLL 583