Pairwise Alignments

Query, 377 a.a., flagellin C from Vibrio cholerae E7946 ATCC 55056

Subject, 280 a.a., flagellin from Dickeya dianthicola ME23

 Score =  132 bits (333), Expect = 9e-36
 Identities = 77/175 (44%), Positives = 108/175 (61%), Gaps = 3/175 (1%)

Query: 1   MAVNVNTNVSAMTAQRYLTSATNAQQSSMERLSSGYKINSAKDDAAGLQISNRLNVQSRG 60
           MAV +NTN  ++ AQ  L  + ++ Q+++ERLSSG  INSAKD+AAG  I N +  Q +G
Sbjct: 1   MAV-INTNSMSLLAQTNLNKSQSSLQTAIERLSSGLAINSAKDNAAGSGIVNGMTAQIKG 59

Query: 61  LGVAVRNANDGISMAQTAEGAMKETTNILQRMRDLSLQSANGSNSKADRVAIQEEITALN 120
           L  A +NANDG+S+ QTAEG +    + LQR+R+L++Q+AN +N   DR AIQ EI    
Sbjct: 60  LTQASKNANDGVSLVQTAEGNLDTINDNLQRIRELAVQAANDTNGTNDRTAIQTEINRRV 119

Query: 121 DELNRVAETTSFGGNKLLNGTFATKSFQIGADNGEAV--MLNIKDMRSDNALMGG 173
           DE+NRVA + +F G  LL+GT     F I   +G      +++      NA  GG
Sbjct: 120 DEINRVAASANFNGKALLDGTVNATGFNIQVGSGTTANDAISVGSAALINATSGG 174



 Score = 96.3 bits (238), Expect = 9e-25
 Identities = 79/245 (32%), Positives = 119/245 (48%), Gaps = 36/245 (14%)

Query: 162 KDMRSDNALMGGKTYQAAN----GKDKNWGVEAGKT------DLTITLKDKREGDVTISI 211
           KD  + + ++ G T Q        K+ N GV   +T       +   L+  RE  V  + 
Sbjct: 41  KDNAAGSGIVNGMTAQIKGLTQASKNANDGVSLVQTAEGNLDTINDNLQRIRELAVQAAN 100

Query: 212 NAKEGDDIEELATYINGQTDMIK---ASVDEEGKLQL----------------FTDNNRI 252
           +    +D   + T IN + D I    AS +  GK  L                 T N+ I
Sbjct: 101 DTNGTNDRTAIQTEINRRVDEINRVAASANFNGKALLDGTVNATGFNIQVGSGTTANDAI 160

Query: 253 D-GAATFGGALAGELGIGAAQDVTVDTLDVTTVGGAQESVAIVDAALKYVDSHRAELGAF 311
             G+A    A +G LGI      T    DV+T  G+   V+ +D AL+ +++ +A +GA 
Sbjct: 161 SVGSAALINATSGGLGI------TTTNTDVSTAAGSTALVSAIDTALQTINTAKANIGAT 214

Query: 312 QNRFNHAINNLDNINENVNASKSRIKDTDFAKETTALTKAQILSQASSSVLAQAKQAPNS 371
            NRF   I+NL N   N++ ++SRI+D D+A E + +++AQIL QA +SVLAQA Q P +
Sbjct: 215 LNRFQSTIDNLSNTINNLSNARSRIQDADYATEVSNMSRAQILQQAGTSVLAQANQVPQT 274

Query: 372 ALALL 376
            L LL
Sbjct: 275 VLKLL 279



 Score = 25.0 bits (53), Expect = 0.003
 Identities = 23/103 (22%), Positives = 42/103 (40%), Gaps = 12/103 (11%)

Query: 43  DDAAGLQISNRLNVQSRGLGVAVRNANDGISMAQTAEGAMKETTNILQRMRDLSLQSANG 102
           +DA  +  +  +N  S GLG+   N +   +   TA          L    D +LQ+ N 
Sbjct: 157 NDAISVGSAALINATSGGLGITTTNTDVSTAAGSTA----------LVSAIDTALQTIN- 205

Query: 103 SNSKADRVAIQEEITALNDELNRVAETTSFGGNKLLNGTFATK 145
             +KA+  A      +  D L+      S   +++ +  +AT+
Sbjct: 206 -TAKANIGATLNRFQSTIDNLSNTINNLSNARSRIQDADYATE 247