Pairwise Alignments

Query, 377 a.a., flagellin C from Vibrio cholerae E7946 ATCC 55056

Subject, 323 a.a., A-type flagellin from Alteromonas macleodii MIT1002

 Score =  243 bits (619), Expect = 7e-69
 Identities = 161/376 (42%), Positives = 216/376 (57%), Gaps = 54/376 (14%)

Query: 1   MAVNVNTNVSAMTAQRYLTSATNAQQSSMERLSSGYKINSAKDDAAGLQISNRLNVQSRG 60
           M++ VNTNVS++ AQR + S++     + ERLSSG +INSA DDAAGLQIS+RL  Q  G
Sbjct: 1   MSLIVNTNVSSLNAQRQMMSSSLGLDQAFERLSSGLRINSAADDAAGLQISDRLQSQILG 60

Query: 61  LGVAVRNANDGISMAQTAEGAMKETTNILQRMRDLSLQSANGSNSKADRVAIQEEITALN 120
           L    RNANDGIS+AQTAEGAM+E T+  QR+R L+ Q+ANGSN+  DR+AIQEEI AL 
Sbjct: 61  LNQGNRNANDGISLAQTAEGAMEEITSSFQRVRTLASQAANGSNTDEDRLAIQEEIRALM 120

Query: 121 DELNRVAETTSFGGNKLLNGTFATKSFQIGADNGEAVMLNIKDMRSDNALMGGKTYQAAN 180
            E+NR+A  T+FGG  LL+GT+    FQ+G+D  + +  +++++          T  AA 
Sbjct: 121 TEVNRIAGDTTFGGENLLDGTY-NGVFQVGSDAVQTIGFSMQNVGG-----SANTISAAG 174

Query: 181 GKDKNWGVEAGKTDLTITLKDKREGDVTISINAKEGDDIEELATYINGQTDMIKASVDEE 240
           G                TL     G  +I+     G   E L+  + G +D +       
Sbjct: 175 G---------------FTL----SGIASIASAITGG---EALSAKLEGLSDSL------- 205

Query: 241 GKLQLFTDNNRIDGAATFGGALAGELGIGAAQDVTVDTLDVTTVGGAQESVAIVDAALKY 300
                        G A     LAG+             + V+T   +Q  +A +D+ +  
Sbjct: 206 -------------GTAN----LAGDFDFAGV--FVASGISVSTQANSQAVLAGMDSLIAV 246

Query: 301 VDSHRAELGAFQNRFNHAINNLDNINENVNASKSRIKDTDFAKETTALTKAQILSQASSS 360
           VD  RAELGA QNRF   INN  NI+EN++A+KSRIKD DFA ET  LT+ QIL QAS +
Sbjct: 247 VDKKRAELGAVQNRFQSTINNQANISENLSAAKSRIKDADFAAETAKLTQNQILQQASQT 306

Query: 361 VLAQAKQAPNSALALL 376
           +LAQA Q P +AL+LL
Sbjct: 307 ILAQANQRPQAALSLL 322