Pairwise Alignments

Query, 417 a.a., uracil permease from Vibrio cholerae E7946 ATCC 55056

Subject, 482 a.a., putative permease (VIMSS) from Escherichia coli BW25113

 Score =  137 bits (346), Expect = 5e-37
 Identities = 122/424 (28%), Positives = 203/424 (47%), Gaps = 43/424 (10%)

Query: 2   KNAIQGAQMLFVAFGALVLVPLLTGLDPNVA-----------LFGAGLGTLLFQLITRR- 49
           K  I G Q + V +   V VPL+ G    ++           LF  G+ TLL  +   R 
Sbjct: 29  KLIILGLQHVLVMYAGAVAVPLMIGDRLGLSKEAIAMLISSDLFCCGIVTLLQCIGIGRF 88

Query: 50  ---SVPIFLASSFAFIAP-IMFGIQT-WGIPATMGGLMAAGAVYIVLGGIIKVRGVAIIH 104
               +P+ ++ +FA + P I  G+    G+    G  +AAG +  +L  +I       + 
Sbjct: 89  MGIRLPVIMSVTFAAVTPMIAIGMNPDIGLLGIFGATIAAGFITTLLAPLI-----GRLM 143

Query: 105 KLLPPVVVGPVIMVIGLGLAPAAVNMALGKTGDGSVQLVDPQAALWISCISLLVTVVFSV 164
            L PP+V G VI  IGL +    ++ A G  G G+ Q  +P   L IS   L+  ++ + 
Sbjct: 144 PLFPPLVTGVVITSIGLSIIQVGIDWAAG--GKGNPQYGNP-VYLGISFAVLIFILLITR 200

Query: 165 FAKGFFKLVPILAGIVSGYAVSLVMGVVSFAAVEQAAWLALP---NFTFPEFNINAILFM 221
           +AKGF   V +L GIV G+ +S +M  V+ + +  A+W A+    +F  P F+  +IL M
Sbjct: 201 YAKGFMSNVAVLLGIVFGFLLSWMMNEVNLSGLHDASWFAIVTPMSFGMPIFDPVSILTM 260

Query: 222 IPVAIAPAVEHVGDMLAISNVTNKDYLKKPGLHRTIAGDGVATMAATMLGAPPNTTYSEV 281
             V I   +E +G  LA+  +  +  L    + R +  DGV TM      + P+T++S+ 
Sbjct: 261 TAVLIIVFIESMGMFLALGEIVGRK-LSSHDIIRGLRVDGVGTMIGGTFNSFPHTSFSQN 319

Query: 282 TGAVMLTRAFNPAIMTWAAITAIVLALVGKLGALLQTIPVPVMGGIMILLFGSIATVGLN 341
            G V +TR  +  +   + I  I+  +V K+  L+ +IP  V+GG  +++FG +   G+ 
Sbjct: 320 VGLVSVTRVHSRWVCISSGIILILFGMVPKMAVLVASIPQFVLGGAGLVMFGMVLATGIR 379

Query: 342 TLIKNQVDLHKSRNLVIVAVTLVFGIGGMAFGVGDFSLQ-----------GVSLCGIVAI 390
            L +     ++  NL IVA++L  G+G       DF  +           G+ L  + A+
Sbjct: 380 ILSRCNYTTNR-YNLYIVAISL--GVGMTPTLSHDFFSKLPAVLQPLLHSGIMLATLSAV 436

Query: 391 VLNL 394
           VLN+
Sbjct: 437 VLNV 440