Pairwise Alignments

Query, 354 a.a., AI-2E family transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 357 a.a., membrane protein from Pseudomonas simiae WCS417

 Score =  142 bits (359), Expect = 1e-38
 Identities = 90/318 (28%), Positives = 168/318 (52%), Gaps = 12/318 (3%)

Query: 30  ITIYFFGHLIAPLLVAIVLAYLLEWPVTQLRRLRIPRTLAVIIVITVFTGLMILAVFGLV 89
           + ++    ++ P LVA++LAYL +  V +L +  + RT  V+ V  +FT ++   V  LV
Sbjct: 18  VFVFLLHSILTPFLVALLLAYLFDPVVDRLEKAGLSRTWGVVAVFALFTLIITALVLVLV 77

Query: 90  PTIWKQVGNLINDVPNMYNGTQKFITSLPERYPELA------HLEIVESVIGNAKNKVLG 143
           P + KQ+  L    P M +  Q   T++P    +L         + V++ I     +   
Sbjct: 78  PMLAKQLFRLYELAPQMLDWLQH--TAMPWAQAKLGLADGFWKFDKVKAAISEHMGQTTD 135

Query: 144 MGESVVKGSLASLVSLATLGVYLILVPLLVFFLLKDKQEMLRMASGILPRNRK-LANKVW 202
           +   V+  + AS ++L      L+L+P++ F+LL+D   M+     +LPR+R+     + 
Sbjct: 136 IVGVVLSQATASSLALIGWLTNLVLIPVVAFYLLRDWDLMMAKIRSLLPRDREERIVSLA 195

Query: 203 EEMNQQISNYIRGKVLEIVIVGTVSYITFAILDLRYSVLLAVAVGLSVLIPYIGAAAVTV 262
           EE ++ +  ++RG++L ++ +G +       + L   +L+ +  GL+ ++PY+G      
Sbjct: 196 EECHEVLGAFVRGQLLVMLALGIIYAAGLMAIGLELGLLIGLIAGLAAIVPYMGFVIGIG 255

Query: 263 PVAIVALFQWG--LTPQFYTLLIAYGIIQALDGNVLVPVLFSEAVNLHPVAIIIAVLVFG 320
              +  LFQ+G  L P    ++  + + QAL+G VL P+L  + + LHPVA+I A+L  G
Sbjct: 256 AALVAGLFQFGGDLYPML-GIVAVFMVGQALEGMVLTPLLVGDRIGLHPVAVIFAILAGG 314

Query: 321 GLWGFWGVFFAIPLATLV 338
            L+GF G+  A+P+A ++
Sbjct: 315 ELFGFTGILLALPVAAVI 332