Pairwise Alignments

Query, 354 a.a., AI-2E family transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 355 a.a., membrane protein from Pseudomonas simiae WCS417

 Score = 68.6 bits (166), Expect = 2e-16
 Identities = 80/341 (23%), Positives = 145/341 (42%), Gaps = 34/341 (9%)

Query: 24  ILLFGFITIYF-------FGHLIAPLLVAIVLAYL---LEWPVTQLRRLRIPRTLAVIIV 73
           +LL G +TI F       +G +   +++ I+ A +   L+      R L    TL+  ++
Sbjct: 12  LLLLGLVTIAFIWILLPFYGAVFWAVILGIIFAPMQRRLQQRFGWNRNLTSLATLSACLI 71

Query: 74  ITVFTGLMILAVFGLV-PTIWKQVGNLINDVPNMYNGTQKFITSLPERYPELAHLEIVES 132
           I +   ++  A+      T++K + +   DV       ++F   LP   P   HL +   
Sbjct: 72  IAILPVIITSALLVQEGATLYKNIESGKLDVAGYI---EQFKNVLP---PYFQHL-LDRF 124

Query: 133 VIGNAKNKVLGMGESVVKGSLASLVSLATLG-----------VYLILVPLLVFFLLKDKQ 181
            +GN +    G+ E +VK ++      AT             V   ++  L++FLL+D  
Sbjct: 125 GMGNLE----GLREKIVKSAMQGSQFFATQAFSFGQGTFDFLVSFFIMLYLLYFLLRDGP 180

Query: 182 EMLRMASGILPRNRKLANKVWEEMNQQISNYIRGKVLEIVIVGTVSYITFAILDLRYSVL 241
           E++R     +P       ++  + N+ +   ++G VL  V  G +  + F  LD+  ++L
Sbjct: 181 ELVRKVRTAVPLAEPQKRRLQLKFNRVVRATVKGNVLVAVTQGALGGLIFWFLDIPSALL 240

Query: 242 LAVAVGLSVLIPYIGAAAVTVPVAIVALFQWGLTPQFYTLLIAYGIIQALDGNVLVPVLF 301
            AV +    L+P +GA  V  PVA   L    +       L    +I  +D NVL P+L 
Sbjct: 241 WAVLMAFLSLLPAVGAGIVWGPVAAYFLLSGAIWQGVVLALFGVFVIGLVD-NVLRPILV 299

Query: 302 SEAVNLHPVAIIIAVLVFGGLWGFWGVFFAIPLATLVKAVW 342
            +   +    I+I+ L    ++G  G      +A L  + W
Sbjct: 300 GKDTKMPDYLILISTLGGLSVFGLNGFVIGPLVAALFMSSW 340