Pairwise Alignments

Query, 354 a.a., AI-2E family transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 356 a.a., permase from Pseudomonas simiae WCS417

 Score =  358 bits (918), Expect = e-103
 Identities = 184/346 (53%), Positives = 239/346 (69%)

Query: 1   MFEMVSRWYKRRFSDPHAASLVAILLFGFITIYFFGHLIAPLLVAIVLAYLLEWPVTQLR 60
           MF+++  W +R FSD  A  L  +L   F  +   G ++AP+L  +VLAYL++  VT L 
Sbjct: 1   MFKVLRDWIQRYFSDEEAVVLAVLLFLAFTAVLTLGGMLAPVLAGMVLAYLMQGLVTTLE 60

Query: 61  RLRIPRTLAVIIVITVFTGLMILAVFGLVPTIWKQVGNLINDVPNMYNGTQKFITSLPER 120
           RLR+P   AV +V  +F GL++L +  ++P +W Q+  L N++P M    Q  +  LPER
Sbjct: 61  RLRLPGGAAVGLVFALFMGLLVLFIVVVLPLLWHQLITLFNELPGMLAKWQSLLLLLPER 120

Query: 121 YPELAHLEIVESVIGNAKNKVLGMGESVVKGSLASLVSLATLGVYLILVPLLVFFLLKDK 180
           YP L   E V   I  A+ ++   G+  +  SL+SL  L  + +YL+LVP+LVFF LKD+
Sbjct: 121 YPHLVSDEQVLQAIEAARGEIGKFGQWALTFSLSSLPLLVNIMIYLVLVPILVFFFLKDR 180

Query: 181 QEMLRMASGILPRNRKLANKVWEEMNQQISNYIRGKVLEIVIVGTVSYITFAILDLRYSV 240
             + R   G LPR R L  +V EEMN+QI+NYIRGKV+EI+I G V+YI F  LDL Y+ 
Sbjct: 181 VMIGRWVRGYLPRERALITRVAEEMNRQIANYIRGKVIEIIICGGVTYIAFIALDLNYAA 240

Query: 241 LLAVAVGLSVLIPYIGAAAVTVPVAIVALFQWGLTPQFYTLLIAYGIIQALDGNVLVPVL 300
           LLA+ VG+SV++PY+GA  VTVPVA++ALFQWG + QF  L+  YGIIQ LDGNVLVP+L
Sbjct: 241 LLALLVGISVVVPYVGAVVVTVPVALIALFQWGWSDQFIYLMAVYGIIQTLDGNVLVPLL 300

Query: 301 FSEAVNLHPVAIIIAVLVFGGLWGFWGVFFAIPLATLVKAVWKALP 346
           FSEAVNLHPVAII AVL+FGGLWGFWGVFFAIPLATL KAV  A P
Sbjct: 301 FSEAVNLHPVAIICAVLLFGGLWGFWGVFFAIPLATLFKAVLDAWP 346