Pairwise Alignments

Query, 354 a.a., AI-2E family transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 357 a.a., putative Transporter from Pseudomonas putida KT2440

 Score =  146 bits (369), Expect = 7e-40
 Identities = 96/341 (28%), Positives = 181/341 (53%), Gaps = 14/341 (4%)

Query: 18  AASLVAILLFGFITIYFFGHLIAPLLVAIVLAYLLEWPVTQLRRLRIPRTLAVIIVITVF 77
           AA L+A+LL      Y   +++ P LV I+LAYL +  V +L RL + RT  V++V  +F
Sbjct: 12  AALLIAVLL------YSLHNILTPFLVGIMLAYLADPLVDRLERLGLSRTWGVVVVFGLF 65

Query: 78  TGLMILAVFGLVPTIWKQVGNLINDVPNMYNGTQKFITSLPERYPELAH----LEIVESV 133
           T L++  +  LVP + KQ+  L    P M +  +       +    LA      + +++ 
Sbjct: 66  TLLLLALLLVLVPMLAKQLVRLYELAPQMLDWLEHVALPWVQGRLGLADGFWKFDKIKAA 125

Query: 134 IGNAKNKVLGMGESVVKGSLASLVSLATLGVYLILVPLLVFFLLKDKQEMLRMASGILPR 193
           IG    +   +   ++  + AS ++L      ++L+P++ F+LL+D   M+    G+LPR
Sbjct: 126 IGAHMGQTTDIVGMLLSQATASSLALVAWLANMVLIPVVGFYLLRDWDLMMGKLRGLLPR 185

Query: 194 NRK-LANKVWEEMNQQISNYIRGKVLEIVIVGTVSYITFAILDLRYSVLLAVAVGLSVLI 252
            R+     +  E ++ +  ++RG+++ ++ +G +      ++ L   +L+ +  GL+ ++
Sbjct: 186 QREPQVMGLAGECHEVLGAFVRGQLMVMLALGVIYSAGLMLVGLELGLLIGMLAGLAAIV 245

Query: 253 PYIGAAAVTVPVAIVALFQWG--LTPQFYTLLIAYGIIQALDGNVLVPVLFSEAVNLHPV 310
           PY+G         +  LFQ+G  L P    ++  + + QAL+G VL P+L  + + LHPV
Sbjct: 246 PYMGFIIGIGAALVAGLFQFGGDLYPML-GIVAVFMVGQALEGMVLTPLLVGDRIGLHPV 304

Query: 311 AIIIAVLVFGGLWGFWGVFFAIPLATLVKAVWKALPSIDEE 351
           A+I A+L  G L+GF GV  A+P+A ++  + + +  + +E
Sbjct: 305 AVIFAILAGGELFGFTGVLLALPVAAVIMVLLRHVHDLYKE 345