Pairwise Alignments

Query, 354 a.a., AI-2E family transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 385 a.a., permease from Agrobacterium fabrum C58

 Score =  120 bits (300), Expect = 8e-32
 Identities = 89/363 (24%), Positives = 169/363 (46%), Gaps = 33/363 (9%)

Query: 22  VAILLFGFITIYFFGHLIAPLLVAIVLAYLLEWPVTQLRRLRIPRTLAVIIVITVFTGLM 81
           + +L    + +  F  ++ P +  + LAY L+     L R  + R +A ++++  F  + 
Sbjct: 18  IGVLAVFVLFLMVFSSILLPFVAGMALAYFLDPVADWLERRGLSRLMATVVILVSFVLIF 77

Query: 82  ILAVFGLVPTIWKQVGNLINDVPNMYNGTQKFITSLPERY-PELAHLEIVESVIGNAKNK 140
            L++  ++P I  Q    I  +P   +  Q+ I        P+    +I  SV  N  +K
Sbjct: 78  ALSLIIIIPLIVAQASEFITRIPQYISSLQQLIAGADTNLLPDWVSGQI-NSVKENF-SK 135

Query: 141 VLGMGESVVKGSLASLV-----SLATLGVYLILVPLLVFFLLKDKQEMLRMASGILPRNR 195
           +L  G   + G+L + +     SL  +   L++ P++ F+LL D   M+      +PR+ 
Sbjct: 136 LLTEGAGFI-GTLLTQIWNSGKSLVDVLSLLVVTPVVAFYLLLDWDRMIDKVDSWIPRDY 194

Query: 196 -KLANKVWEEMNQQISNYIRGKVLEIVIVGTVSYITFAILDLRYSVLLAVAVGLSVLIPY 254
                ++  +M++ I+ ++RG+    +I+G    +  +++ L + +L+ +  GL   IPY
Sbjct: 195 VHTVRQIARDMDKTIAGFVRGQGSLCLILGVYYAVGLSLVGLNFGLLIGLFSGLISFIPY 254

Query: 255 IGAAAVTVPVAIVALFQ-WGLTPQFYTLLIAYGIIQALDGNVLVPVLFSEAVNLHPVAII 313
           IG+    +    VA+ Q W      +  L+ +   Q ++GN+L P L  ++V LHPV ++
Sbjct: 255 IGSMVGLILAVGVAIVQFWPDYIYVFLTLVVFFSGQFIEGNILQPKLVGKSVGLHPVWLM 314

Query: 314 IAVLVFGGLWGFWGVFFAIPLATLVKAV----------------------WKALPSIDEE 351
            A+  FG L+GF G+  A+P A  V  +                      W A P+++E 
Sbjct: 315 FALFAFGALFGFVGLLVAVPAAAAVGVLVRFALSRYLESDLYHGHAANLPWDANPALEER 374

Query: 352 PAS 354
            AS
Sbjct: 375 EAS 377