Pairwise Alignments

Query, 623 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 712 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  278 bits (711), Expect = 6e-79
 Identities = 193/529 (36%), Positives = 293/529 (55%), Gaps = 28/529 (5%)

Query: 123 RKRPWYVDAKRERKLVVTEP--YVDISTKKIIISIGTPVYQQSNFVGAMFYDVELTQLAQ 180
           R   +Y+ +K  +K    +P  Y   +   ++ S   P+     F G +  D+ +  +  
Sbjct: 184 RASEYYLCSKENKKACAIDPAPYKVGNAMVMLASFIEPIMIDGAFQGIVGADLSVNFIQD 243

Query: 181 LVNSVN--LFD-AGYLFITTKDGVTIAHP-NAENNGEKFSQFLPNVDL------KEGTQR 230
           ++ S +  L++ AG + + + +G  +A+  +A   GEK S  L + +L      K G  R
Sbjct: 244 MLTSADQKLYNGAGEMALISSNGRLVAYTKDASKLGEKASDLLDSNELTNLNQLKAGEVR 303

Query: 231 IELDGKY-----YLVKFAQVPSESWYI------GAVVDESIAFAMVDDLRHSSLIY--TV 277
            ++D ++     +L          W +       AV+ +S       + +  + I+  T+
Sbjct: 304 YDIDKEHGHIELFLPFTIGQADARWTLMLQLPLSAVMADSQKLQSDLEAQRKTDIFGMTI 363

Query: 278 IGVLLSIIGLSFLIKV---LMKPLGALSRAIEDVASGQGDLTKRLDTNTDMEFAILAKDF 334
            G+L++ IGL  +  V   + +PL  +   + D+A G+GDLT+RL ++   E   +A  F
Sbjct: 364 AGLLIAGIGLLVIWLVGHGIARPLKQMVAMLNDIAQGEGDLTRRLTSDRADELGAIANGF 423

Query: 335 NVFCETLQKRIQHLKGIGAEIMHGTEQTVLGAHESASAMAQQLQELEQLATAMHEMAVTA 394
           N F   LQ  I  +     ++   +E T   A  +   + +Q+ E++Q+ATA+HEM  TA
Sbjct: 424 NTFLIKLQGMITQVVSSVQKVSDSSEHTADIAIRTNQGVHKQMVEIDQVATAVHEMTATA 483

Query: 395 TEVANNAQGAAAAAHEADEASQDGSKVVSDTTRSIDALSARIEQAVEEVKGLEVATGNIE 454
            +VA NA  AA AA  AD+A+  G ++V DT+ SI AL+  I +AV  V+ L   + NI 
Sbjct: 484 QDVARNATQAAQAASHADQAASQGMRIVRDTSTSIGALAEEIGKAVSVVQTLAKDSENIN 543

Query: 455 TILKVINDIADQTNLLALNAAIEAARAGESGRGFAVVADEVRTLAQRTQQSTTEIRNMIE 514
            IL  I  IA+QTNLLALNAAIEAARAGE GRGFAVVADEVR LAQ+TQ++T EI+ MI+
Sbjct: 544 AILTAIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAQKTQKATEEIQTMIQ 603

Query: 515 QLQSGASAVSAAMNESKYTADDAVQKAQLANESLQRIRGAIQRISDMNMQIASAAEEQSL 574
           QLQ G   V   M +S+   D++VQ A  A E+L+ I  A+  I+DMN QIASAAEEQS 
Sbjct: 604 QLQQGTRDVVRVMEDSQSRTDESVQHAAKAAEALETITQAVSVINDMNTQIASAAEEQSA 663

Query: 575 VAEEINTNTVKIKDLSTQVADSAKSASMAMEVQTENVREQGKLLNTFIV 623
           VAE+IN N + I  ++ +VA  A  +S A    T+   +Q +L+N F V
Sbjct: 664 VAEDINRNVINIGQVANEVAGGADESSAASADLTKLAEQQRRLINQFKV 712