Pairwise Alignments

Query, 623 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 629 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  347 bits (891), Expect = e-100
 Identities = 212/626 (33%), Positives = 335/626 (53%), Gaps = 8/626 (1%)

Query: 1   MRFSQKIVAASSALLLCVIALLSFQQLSTVREEIESLVQDSLMEMVKGVKNTIESDLASK 60
           +RFS KI+ A+S +++   AL +       R  I   + + L EM     + I++ L  +
Sbjct: 5   LRFSHKILLAASLIVIAAFALFTLYNDYLQRNAIRDDLNNYLQEMGDVTASNIQTWLGGR 64

Query: 61  KGLAQSTTEILQLDPTNKAFAKSVLESPNLKGSFLAIGLGYESDATVVENDDGWEPNADY 120
             L ++  + + ++P   A A S+LE   L  SF+A  +G    A  +  D        +
Sbjct: 65  IALVENAAQNIAINPEPSAVA-SLLEQKTLTSSFMATYVGDSKGAFTIRPDTKMPDG--F 121

Query: 121 DPRKRPWYVDAKRERKLVVTEPYVDISTKKIIISIGTPVYQQSNFVGAMFYDVELTQLAQ 180
           DPR RPWY  A+      +TEPY+D +T K+IIS+ TP  Q +  +G +  D+ L  L  
Sbjct: 122 DPRVRPWYKGAQSSNGSTLTEPYIDAATGKLIISVATPSTQGTQSIGVVGGDLSLQTLVD 181

Query: 181 LVNSVNLFDAGYLFITTKDGVTIAHPNAENNGEKFSQFLPNVDLKEGTQ--RIELDGKYY 238
            + ++N    GY F+ + DG  + HP+     +  +   P    K       +E +GK  
Sbjct: 182 NIGALNFGGMGYAFLVSADGKVLVHPDKNLVMKTLADVYPKNTPKISADFSEVEANGKDN 241

Query: 239 LVKFAQV---PSESWYIGAVVDESIAFAMVDDLRHSSLIYTVIGVLLSIIGLSFLIKVLM 295
           +V F  +   PS +W +G  VD+  +FAM+ + R S++I T I V++ I  L  LI++LM
Sbjct: 242 IVTFIPIKGLPSVNWDLGISVDKDKSFAMLSEFRTSAVIATFIAVVIIIALLGMLIRILM 301

Query: 296 KPLGALSRAIEDVASGQGDLTKRLDTNTDMEFAILAKDFNVFCETLQKRIQHLKGIGAEI 355
           +PL  ++RA++D+A G+GDLT+RL      EF +L   FN F E +   I+ +      +
Sbjct: 302 QPLHLMTRAMQDIADGEGDLTRRLTIQNHDEFGMLGNAFNRFVERIHTSIREVSSATEHV 361

Query: 356 MHGTEQTVLGAHESASAMAQQLQELEQLATAMHEMAVTATEVANNAQGAAAAAHEADEAS 415
                + V  ++ S     +Q      +A A++++   A E+A NA  A+  A +A   +
Sbjct: 362 NEVALRVVSASNSSMVNSDEQANRTNSVAAAINQLGAAAQEIARNAAQASHQASDARHLA 421

Query: 416 QDGSKVVSDTTRSIDALSARIEQAVEEVKGLEVATGNIETILKVINDIADQTNLLALNAA 475
           +DG +VV    ++++ LS+ I  +   ++ L   T NI  IL+VI  I+ QTNLLALNAA
Sbjct: 422 EDGQQVVERNIKAMNQLSSMISASSSNIEALNSKTVNIGQILEVITSISQQTNLLALNAA 481

Query: 476 IEAARAGESGRGFAVVADEVRTLAQRTQQSTTEIRNMIEQLQSGASAVSAAMNESKYTAD 535
           IEAARAGE+GRGFAVVADEVR LA RTQ+S  +++ MIE+LQ GA    + M ES+  + 
Sbjct: 482 IEAARAGEAGRGFAVVADEVRNLAHRTQESAQQVQKMIEELQVGARESVSTMGESQRHSL 541

Query: 536 DAVQKAQLANESLQRIRGAIQRISDMNMQIASAAEEQSLVAEEINTNTVKIKDLSTQVAD 595
           ++V  A LA E L  +   I  I  MN  +A+A EEQ+ V E IN +  +I  L+ +  +
Sbjct: 542 ESVDIANLAGERLNSVTQRIGEIDGMNQSVATATEEQTSVVESINMDITEINTLNQEGVE 601

Query: 596 SAKSASMAMEVQTENVREQGKLLNTF 621
           + +S   A     +      +L+ +F
Sbjct: 602 NLQSTLRACADLEQQAARLKQLVGSF 627