Pairwise Alignments

Query, 623 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 715 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  276 bits (706), Expect = 2e-78
 Identities = 211/640 (32%), Positives = 334/640 (52%), Gaps = 50/640 (7%)

Query: 25  QQLSTVREEIESLVQDSL---MEMVKGVKNTIESDLASKKGLAQSTTEILQLDPTNKAFA 81
           +Q+  +RE+ E    D+     ++ + VK  ++++     GL+    E   LD  ++ FA
Sbjct: 85  RQVLFLREQAEKRFLDAFDTREDLTRQVKAALQAN-PDLLGLSL-VFEANALDGKDELFA 142

Query: 82  KSVLESPNLKGSFLAIGLGYESDATVVENDDGWEPNADYDP--------RKRPWYVDAKR 133
                  N KG F      Y S  T  + +    P +D           +   W+   + 
Sbjct: 143 GQAELGSNDKGRFAL----YWSQPTPGKLESMALPESDMSDTSVGPSGEKANAWFTCPRT 198

Query: 134 ERKLVVTEPYV-DISTKKIII-SIGTPVYQQSNFVGAMFYDVELTQLAQLVN--SVNLFD 189
             K  V EPY   I+ + +++ SI  P+      + ++  D+ L  L  +    S  L+D
Sbjct: 199 LLKPCVIEPYFYRINGQNVLMTSIVFPLMANGKVIASLSVDINLNSLQAVSQQASQKLYD 258

Query: 190 AG-YLFITTKDGVTIAHPNAENNGEKFSQFLPNVDLKEGTQRI------------ELDGK 236
               + I +  G+   +     +  K SQ L  VD   G Q I              D +
Sbjct: 259 GQTQVSILSPTGLLAGY---SPDASKLSQRLDQVDTANGAQLIGALASSTHIRSLRTDHQ 315

Query: 237 Y-YLVKFAQVPS-ESWYIGAVVDESIAFAMVDDLR--------HSSLIYTVIGVLLSIIG 286
              L  FA +P  + W +   V E +     + L+          +L+   +G+L +++G
Sbjct: 316 LKVLAPFAPIPEGKPWGVLLDVPEKVLVGPAEALKAQMDAENTRGTLLELGLGLLAAVVG 375

Query: 287 LSF---LIKVLMKPLGALSRAIEDVASGQGDLTKRLDTNTDMEFAILAKDFNVFCETLQK 343
           L     + + + +P+  ++  +ED+ASG+GDLT+RL  +   E   LA  FN F + LQ 
Sbjct: 376 LILVWLMARSVTRPILGVAHMLEDIASGEGDLTRRLAYDKQDELGQLAGWFNRFLDKLQP 435

Query: 344 RIQHLKGIGAEIMHGTEQTVLGAHESASAMAQQLQELEQLATAMHEMAVTATEVANNAQG 403
            I  +K    +     +Q+   A ++++ M QQ ++++Q+ATA HEM+ TA +VA +A  
Sbjct: 436 IIAEVKRSVQDARGTADQSAAIATQTSAGMEQQYRQVDQVATASHEMSATAQDVARSAAQ 495

Query: 404 AAAAAHEADEASQDGSKVVSDTTRSIDALSARIEQAVEEVKGLEVATGNIETILKVINDI 463
           AA AA +AD+A++DG  V+  TT +I AL++ +  A+ +V+GL   +  I ++L+VI  I
Sbjct: 496 AAQAARDADQATRDGLTVIEHTTHNIGALASDMSTAMTQVEGLAANSEKIGSVLEVIRGI 555

Query: 464 ADQTNLLALNAAIEAARAGESGRGFAVVADEVRTLAQRTQQSTTEIRNMIEQLQSGASAV 523
           A+QTNLLALNAAIEAARAGE+GRGFAVVADEVR LAQRTQ+S  E R +IE LQ+G  AV
Sbjct: 556 AEQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLAQRTQESVEETRLVIEHLQNGTEAV 615

Query: 524 SAAMNESKYTADDAVQKAQLANESLQRIRGAIQRISDMNMQIASAAEEQSLVAEEINTNT 583
             +M  S   A  +V++   A  +L++I  A+  ISDMN+QIASAAEEQS VAEEIN N 
Sbjct: 616 VGSMGNSYRQAQGSVEQVGQAVTALRQIGDAVTVISDMNLQIASAAEEQSAVAEEINNNV 675

Query: 584 VKIKDLSTQVADSAKSASMAMEVQTENVREQGKLLNTFIV 623
             I+D++  +++ A  ++   +       +Q  L++ F V
Sbjct: 676 ATIRDVTESLSEQANESARVSQALNSLANQQQGLMDQFRV 715