Pairwise Alignments

Query, 623 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 643 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  259 bits (661), Expect = 3e-73
 Identities = 194/635 (30%), Positives = 308/635 (48%), Gaps = 36/635 (5%)

Query: 11  SSALLLCVIALL---SFQQLSTVREEIESLVQDS-------LMEMVKGVKNTIESDLASK 60
           +S ++L  I+L+   +   LS  RE I+SL  ++       + E+   VK+  E   A  
Sbjct: 18  ASVVILVTISLMVLGTINMLSLKREMIDSLTTETQNKLNYHVSELEFWVKSRYE---AVS 74

Query: 61  KGLAQSTTEILQLDPTNKAFAKSVLESPNLKGSFLAIGLGYESDATVVEND-DGWEPNAD 119
           +G    T E+   D  NK   + + E+  +     A    YE   + +  D +G      
Sbjct: 75  RGANLFTPELSDTDNLNKV--RLLAEAAQITNVIAA----YEDGRSYMSMDKEGGVTTNR 128

Query: 120 YDPRKRPWYVDAKRERKLVVTEPYVDISTKKIIISIGTPVYQQSNFVGAMFYDVELTQLA 179
           +    R WY  AK  R   +TE Y D  T K +IS  +P+  Q  FVGA+  D +L  + 
Sbjct: 129 FKFTDRDWYQQAKSRRSPFLTEIYQDQVTGKKVISAVSPILHQGQFVGALLGDFQLDDII 188

Query: 180 QLVNSVNLFDAGYLFITTKDGVTIAHPNAENNGEKFSQFLPNV-DLKEGTQR-------- 230
             V+++  F  G   +T K+ V  A  +  + G   SQ  P+  +++ G  R        
Sbjct: 189 TQVSNMR-FAGGAATLTDKNAVFFASDDPNDIGRTPSQVSPSFREMEAGFHRQESGHLSF 247

Query: 231 ----IELDGKYYLVKFAQVPSESWYIGAVVDESIAFAMVDDLRHSSLIYTVIGVLLSIIG 286
               IE DG Y  V         W +   VD++ A A VD    +++   ++ + +S+  
Sbjct: 248 PYLGIEFDGYYKRVNLTD--DMYWTLMVFVDKATALADVDVAVANAITTGIVLIGISVGV 305

Query: 287 LSFLIKVLMKPLGALSRAIEDVASGQGDLTKRLDTNTDMEFAILAKDFNVFCETLQKRIQ 346
           + F+I  + KPL  L  A+ D+A G GDLT+RL+ N + + A +++ FN F   LQ  + 
Sbjct: 306 IIFIINQIYKPLLRLKVAVLDLAQGSGDLTRRLEVNGNDDLAQISEGFNRFSGNLQNMML 365

Query: 347 HLKGIGAEIMHGTEQTVLGAHESASAMAQQLQELEQLATAMHEMAVTATEVANNAQGAAA 406
            +      I    EQ    A E+   +     E +Q+ TA+ +M+ +A  VA +   +  
Sbjct: 366 QISDATQIISSSIEQLSQTAKENEQMLISHSSETDQVVTAITQMSESARTVAESVTQSNQ 425

Query: 407 AAHEADEASQDGSKVVSDTTRSIDALSARIEQAVEEVKGLEVATGNIETILKVINDIADQ 466
               A + +Q    +V++   ++ +L   +E   E +  +      I  +L VI  I++Q
Sbjct: 426 ITEAASKEAQQSLVIVNNAVSTVTSLVNDVENMSESISNMNRDANKISEVLSVIGAISEQ 485

Query: 467 TNLLALNAAIEAARAGESGRGFAVVADEVRTLAQRTQQSTTEIRNMIEQLQSGASAVSAA 526
           TNLLALNAAIEAARAGE GRGFAVVADEVR LA RTQ STTEI +M+ +L  G  +V  A
Sbjct: 486 TNLLALNAAIEAARAGEQGRGFAVVADEVRALAARTQNSTTEISDMLTKLLEGTDSVVGA 545

Query: 527 MNESKYTADDAVQKAQLANESLQRIRGAIQRISDMNMQIASAAEEQSLVAEEINTNTVKI 586
           M  +K        K    + SL  +  ++  I D++ QIA+A E+QS VA E++ N + I
Sbjct: 546 MERTKQQCQTTADKTSEVSGSLNMMSASVSDIDDLSTQIAAATEQQSTVAAELSRNMLSI 605

Query: 587 KDLSTQVADSAKSASMAMEVQTENVREQGKLLNTF 621
           +++   +  S +    A E  + +  E  +L+  F
Sbjct: 606 REIVESLVVSGRQTVGATESLSHSNHELEQLVGKF 640