Pairwise Alignments

Query, 623 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 706 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  228 bits (580), Expect = 9e-64
 Identities = 199/685 (29%), Positives = 326/685 (47%), Gaps = 88/685 (12%)

Query: 4   SQKIVAASSALLLCVIALLSFQQLSTVREEI----ESLVQDSLMEMVKGVKNTIESDLAS 59
           S + V   S  LL   ALL+  ++S    E     E L  ++L      +KN  E +   
Sbjct: 44  SSESVIDKSQQLLQTGALLNATEISEYLSEAIYRAEMLAANALF-----LKNNSEENFGE 98

Query: 60  KKGLAQSTTEILQLDPTNKAFAKSVLESPNLKGSFLAIGLGYESDATVVENDDGWEPNAD 119
            + L  S  E+++         KSVL    ++G++L           +++++D    NAD
Sbjct: 99  SEVLRTSLDEMVR---------KSVLGFDTIEGAYLVFR------PNMLDSEDSNYVNAD 143

Query: 120 Y----------------------------------DPRKRPWYVDAKRERKLVVTEPYVD 145
           Y                                  +  K  +    ++    + +   V+
Sbjct: 144 YVGSNDIGQFAAYWTKAANGQNVISRVLTQAQLTEESNKERFVCPIEQASPCITSPRMVE 203

Query: 146 ISTKKIII-SIGTPVYQQSNFVGAMFYDVELTQLAQLVNSV-----NLFDA-GYLFITTK 198
             T + +  S+  P+      +G  FY ++LT LA L+        NLFD  G + I ++
Sbjct: 204 FETGRYLATSLSVPILIDGVAIG--FYGIDLT-LAPLIGITQKSDNNLFDGQGKVSIVSE 260

Query: 199 DGVTIAHPNAENN-GEKF-SQFLPNVDLKEGTQRIELDGKY-----YLVKFA--QVPSES 249
           +   +A   A    GE F S+ L    +    Q  +++ ++     +LV FA  +V +++
Sbjct: 261 NNALVASDAAFLTLGETFQSENLSRSTVSSLLQAGQVNTQWSEDGQWLVVFAPIKVANQN 320

Query: 250 WYI-------GAVVD-ESIAFAMVDDLRHSSLIYTVIGVLLSIIGL---SFLIKVLMKPL 298
           W I         + D E +   + + L        ++G L+ ++GL   + +   L++P+
Sbjct: 321 WGIIFEMPRQSVMQDAEQLDILLTEQLERGIRSELMVGTLMVVVGLLVVTLMAMRLVRPI 380

Query: 299 GALSRAIEDVASGQGDLTKRLDTNTDMEFAILAKDFNVFCETLQKRIQHLKGIGAEIMHG 358
            A++  ++D++SG+GDLT+RL  N+  E   LA+ FN+F + LQ  I+ +     +++  
Sbjct: 381 RAVAERLQDISSGEGDLTQRLQVNSADEIGQLAQGFNLFMDKLQPIIRRVVDNTGQVVST 440

Query: 359 TEQTVLGAHESASAMAQQLQELEQLATAMHEMAVTATEVANNAQGAAAAAHEADEASQDG 418
           TEQ       +  +   Q +E++ +ATA  EM  T+  V  NAQ A  AA +A  A+Q G
Sbjct: 441 TEQVKSTVESTRRSSEAQFKEVDSVATAAEEMTQTSAHVVENAQRAVNAASDAQRAAQTG 500

Query: 419 SKVVSDTTRSIDALSARIEQAVEEVKGLEVATGNIETILKVINDIADQTNLLALNAAIEA 478
            +V+  +   ++ L  R+  AV  V+ L      I  IL VI  I++QTNLLALNAAIEA
Sbjct: 501 DEVIRHSQMQMNQLVDRMNLAVPVVEELARNNTGIIEILSVIEGISEQTNLLALNAAIEA 560

Query: 479 ARAGESGRGFAVVADEVRTLAQRTQQSTTEIRNMIEQLQSGASAVSAAMNESKYTADDAV 538
           ARAGE GRGFAVVADEVR+LA RTQ S  EIR++I +++ G   V  A+  S  TA    
Sbjct: 561 ARAGEQGRGFAVVADEVRSLASRTQASVGEIRSVINKVELGTQDVVKAIQGSNETAQATA 620

Query: 539 QKAQLANESLQRIRGAIQRISDMNMQIASAAEEQSLVAEEINTNTVKIKDLSTQVADSAK 598
           ++   A   L R+  AI  I++M+ QI  AA++Q  V+ ++  + V I+DLS Q+    +
Sbjct: 621 EQVADAVTQLNRVFSAIHAINEMSHQIVQAAQDQQTVSAQVTQSVVNIRDLSAQILSETE 680

Query: 599 SASMAMEVQTENVREQGKLLNTFIV 623
           ++    E       EQ  L+  F V
Sbjct: 681 ASEKVGEQIARLSFEQQTLVGQFKV 705