Pairwise Alignments

Query, 623 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 631 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  313 bits (802), Expect = 1e-89
 Identities = 206/610 (33%), Positives = 318/610 (52%), Gaps = 16/610 (2%)

Query: 1   MRFSQKIVAASSALLLCVIALLSFQQLSTVREEIESLVQDSLMEMVKGVKNTIESDLASK 60
           +    K++ AS + ++ +   L++   S ++++  + V      +       I   ++ +
Sbjct: 7   LTLKHKLIGASLSAVVVMATALTWFSASQLQQQTSNAVYTRADAISSTAAKGISDWISIR 66

Query: 61  KGLAQSTTEILQLDPTNKAFAKSVLESPNLKGSFLAIGLGYESDATVVENDDGWEPNADY 120
           K +  ST     ++  N       L+     G F  I  G    A    + +     ADY
Sbjct: 67  KSI--STAFNAHIEAQNVV---PYLQQARNAGGFDDIFYGTTDGAMYRSHPE--RNRADY 119

Query: 121 DPRKRPWYVDAKRERKLVVTEPYVDISTKKIIISIGTPVYQQSNFVGAMFYDVELTQLAQ 180
           DPR RPWY DA    K ++T  Y D  T  ++++I  PV    N  G +  DV + QL  
Sbjct: 120 DPRTRPWYKDAASAGKQIITTAYSDAITGALLVTIAEPVRLNGNMSGVVGADVLIDQLIA 179

Query: 181 LVNSVNLF-DAGYLFITTKDGVTIAHPNAENNGEKFSQFLPNVDLKEGTQR--------I 231
            V S++   +A  + I  ++G  +AHP+     +  +     +D++   +         +
Sbjct: 180 DVISMDAGKNAQTMLIDGQNGSFLAHPDKSLLLKPVTTLSSALDMRTIERAANQGELLAL 239

Query: 232 ELDGKYYLVKFAQVPSESWYIGAVVDESIAFAMVDDLRHSSLIYTVIGVLLSIIGLSFLI 291
           +L+G      F  VP   WY    +D    +A   +L    +   ++  ++ ++ +S+L+
Sbjct: 240 KLNGVEKFFFFTAVPDTPWYFAVQMDSDTEYASHSELLTGLITTALLITVIVVVIVSWLV 299

Query: 292 KVLMKPLGALSRAIEDVASGQGDLTKRLDTNTDMEFAILAKDFNVFCETLQKRIQHLKGI 351
             L + LG +S+A+E++ASG  DLT+RL+  +D E   LA +FN F   +   +  L  +
Sbjct: 300 SFLFRDLGRVSKALEEIASGDADLTQRLEPRSDDEVGQLASNFNTFVSNMHTMVLKLSHV 359

Query: 352 GAEIMHGTEQTVLGAHESASAMAQQLQELEQLATAMHEMAVTATEVANNAQGAAAAAHEA 411
            A +   ++ T   A E +S +  Q  E+  +ATA++EMA    E+A NA   A  A EA
Sbjct: 360 SAALAQQSKVTAAQAEERSSRIRLQQDEINMVATAINEMAAATQEIAGNADHTAQNAGEA 419

Query: 412 DEASQDGSKVVSDTTRSIDALSARIEQAVEEVKGLEVATGNIETILKVINDIADQTNLLA 471
             A   G+  V+ T RSI +L+  ++ A E ++ LE     I TIL  I +IA+QTNLLA
Sbjct: 420 VTACVHGAGQVTQTQRSIQSLAEEVQVATEVIQELEAHGHQISTILSTIQNIAEQTNLLA 479

Query: 472 LNAAIEAARAGESGRGFAVVADEVRTLAQRTQQSTTEIRNMIEQLQSGASAVSAAMNESK 531
           LNAAIEAARAGE GRGFAVVADEVR L+QRT  ST EI+ MIE LQ+        M++S+
Sbjct: 480 LNAAIEAARAGEQGRGFAVVADEVRVLSQRTHASTKEIQQMIETLQATTGKAVGIMDDSR 539

Query: 532 YTADDAVQKAQLANESLQRIRGAIQRISDMNMQIASAAEEQSLVAEEINTNTVKIKDLST 591
             AD +V  A  A+ SL++I   ++RISDM  QIASAAEEQ+ V  EI  NTV I+D+S 
Sbjct: 540 RLADTSVDDANEASVSLEQIHKTVERISDMATQIASAAEEQASVTSEITRNTVGIRDVSN 599

Query: 592 QVADSAKSAS 601
            +A  A SA+
Sbjct: 600 DLAQEAHSAA 609



 Score = 34.7 bits (78), Expect = 1e-05
 Identities = 40/192 (20%), Positives = 69/192 (35%), Gaps = 29/192 (15%)

Query: 352 GAEIMHGTEQTVLGAHESASAMAQQLQELE----QLATAMHEM--------------AVT 393
           GA  +  T++++    E      + +QELE    Q++T +  +              A+ 
Sbjct: 426 GAGQVTQTQRSIQSLAEEVQVATEVIQELEAHGHQISTILSTIQNIAEQTNLLALNAAIE 485

Query: 394 ATEVANNAQGAAAAAHEADEASQDGSKVVSDTTRSIDALSARIEQAV-----------EE 442
           A       +G A  A E    SQ       +  + I+ L A   +AV             
Sbjct: 486 AARAGEQGRGFAVVADEVRVLSQRTHASTKEIQQMIETLQATTGKAVGIMDDSRRLADTS 545

Query: 443 VKGLEVATGNIETILKVINDIADQTNLLALNAAIEAARAGESGRGFAVVADEVRTLAQRT 502
           V     A+ ++E I K +  I+D    +A  A  +A+   E  R    + D    LAQ  
Sbjct: 546 VDDANEASVSLEQIHKTVERISDMATQIASAAEEQASVTSEITRNTVGIRDVSNDLAQEA 605

Query: 503 QQSTTEIRNMIE 514
             +  +   + E
Sbjct: 606 HSAAEQAAELSE 617