Pairwise Alignments

Query, 623 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  328 bits (840), Expect = 6e-94
 Identities = 193/626 (30%), Positives = 344/626 (54%), Gaps = 3/626 (0%)

Query: 1   MRFSQKIVAASSALLLCVIALLSFQQLSTVREEIESLVQDSLMEMVKGVKNTIESDLASK 60
           M+FS K++   +++++ + ++L++ Q+    E ++  ++D++ E +  +++ I   + SK
Sbjct: 1   MKFSIKLLMIFTSIIITISSILTYFQMHGTNEYLDRTIKDTISETLDSLEDKINLSIESK 60

Query: 61  KGLAQSTTEILQ--LDPTNKAFAKSVLESPNLKGSFLAIGLGYESDATVVENDDGWEPNA 118
             +++S  +I +  L+  +       ++  +L   F   G   E    ++ ND  ++   
Sbjct: 61  VDVSKSVIDIYENLLEGESPLSKFKDVDVNHLSNVFQLFGYADERTGEIITNDPNFKVPT 120

Query: 119 DYDPRKRPWYVDAKRERKLVVTEPYVDISTKKIIISIGTPVYQQSNFVGAMFYDVELTQL 178
            +DPR R WY++AK+     ++EPYVD+ T+K++++   P+Y +++  G +F+D+ L  +
Sbjct: 121 GFDPRTRSWYLNAKKLNTFSLSEPYVDLITEKLMVTTSAPIYNKNDLTGVIFFDIPLDDV 180

Query: 179 AQLVNSVNLFDAGYLFITTKDGVTIAHPNAENNGEKFSQFLPNVDLKEGTQRI-ELDGKY 237
            +L+ S N FDAG +FI    G  I     + +G+       +  L     +  + +G  
Sbjct: 181 QELIKSYNPFDAGTIFIVDNSGKIIFGNKNDISGKNLFGDFDSFPLSVSESKTKDKNGVN 240

Query: 238 YLVKFAQVPSESWYIGAVVDESIAFAMVDDLRHSSLIYTVIGVLLSIIGLSFLIKVLMKP 297
           Y V         W + +++D   A + +  LR++S+   VI   +    L F +++++KP
Sbjct: 241 YDVLIKMSDFGGWNLVSIIDHDKARSDIITLRNNSIFTAVILASVFFAILLFTMRLMLKP 300

Query: 298 LGALSRAIEDVASGQGDLTKRLDTNTDMEFAILAKDFNVFCETLQKRIQHLKGIGAEIMH 357
           L  L+ A+ +++SG  DLT R+  +TD EF+ +   FN+F   LQ  +  +K    +I  
Sbjct: 301 LHQLTDAMVNISSGSADLTVRIPNSTDQEFSKIINSFNIFVGNLQSIVSEVKMNSEKINC 360

Query: 358 GTEQTVLGAHESASAMAQQLQELEQLATAMHEMAVTATEVANNAQGAAAAAHEADEASQD 417
            T +T        +++A Q +EL+ LA++M+EM  T+ ++A     A+    + +    +
Sbjct: 361 ITTETQELVEVCNNSVADQYRELDMLASSMNEMVATSNQIAQITSEASEITSKINGQVNE 420

Query: 418 GSKVVSDTTRSIDALSARIEQAVEEVKGLEVATGNIETILKVINDIADQTNLLALNAAIE 477
           G   VS  T S+  L  ++++    ++ L   T NI+ ILK INDIADQTNLLALNAAIE
Sbjct: 421 GVGAVSSVTESVGNLVEKLDKTKSVIQDLNRQTQNIDVILKAINDIADQTNLLALNAAIE 480

Query: 478 AARAGESGRGFAVVADEVRTLAQRTQQSTTEIRNMIEQLQSGASAVSAAMNESKYTADDA 537
           AARAGE+GRGFAVVADEVR+LA +TQ+ST  I ++I  LQ  +      M+ES   A + 
Sbjct: 481 AARAGENGRGFAVVADEVRSLAIKTQESTKNIGSIIHILQENSLLSVHVMDESFNIASET 540

Query: 538 VQKAQLANESLQRIRGAIQRISDMNMQIASAAEEQSLVAEEINTNTVKIKDLSTQVADSA 597
           +  +  + + L  I  ++ +I D+  Q+A+AA EQS V+EEIN+N++ IKD +  ++   
Sbjct: 541 MTISADSKQCLDNISQSVIQIVDITNQVATAAYEQSHVSEEINSNSISIKDKADTLSSLG 600

Query: 598 KSASMAMEVQTENVREQGKLLNTFIV 623
              S     Q   +  Q  L++ FI+
Sbjct: 601 NKISQQAYSQKALIGHQDDLISKFII 626