Pairwise Alignments

Query, 623 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 714 a.a., Methyl-accepting chemotaxis transducer from Pseudomonas putida KT2440

 Score =  278 bits (711), Expect = 6e-79
 Identities = 192/539 (35%), Positives = 295/539 (54%), Gaps = 35/539 (6%)

Query: 117 NADYDPRKRP---WYVDAKRERKLVVTEPYV-DISTKKIII-SIGTPVYQQSNFVGAMFY 171
           N +  P  +P   W+V  +   K+ V EPY  DI  +++++ SI  P+      +  +  
Sbjct: 179 NTEIGPSGQPANTWWVCPRTSGKVCVVEPYFYDIDGQQVLMTSIVFPLAVNGKIIATLSI 238

Query: 172 DVELTQLAQLVN--SVNLFDAGYLF-ITTKDGVTIAHPNAENNGEKFSQFLPNVDLKEGT 228
           D+ L  L  L    S +L++      I T  G+   +     +  K +Q    VD  +G 
Sbjct: 239 DINLNSLQALSQEASRSLYEGRTTVGILTPVGLLAGY---SADASKLAQRFDQVDPTKGA 295

Query: 229 QRIE--LDGKY----------YLVKFAQVP-SESWYIGAVVDESIAFAMVDDLRHS---- 271
           + +    DGK            L  F  +P ++ W +   V E+      + L+      
Sbjct: 296 ELVRKLADGKLTTLHDRQRLKVLAAFRPIPDAQPWGVLLDVPENALTGPAETLKQELDAL 355

Query: 272 ----SLIYTVIGVLLSIIGLSF---LIKVLMKPLGALSRAIEDVASGQGDLTKRLDTNTD 324
               +L+   +G+  +I+GL     + + + +P+  ++  ++D+ASG+GDLT+RL     
Sbjct: 356 NTSGTLLELSLGLAAAIVGLLLVWLMARGVTRPILGVAAMLKDIASGEGDLTRRLTYQKQ 415

Query: 325 MEFAILAKDFNVFCETLQKRIQHLKGIGAEIMHGTEQTVLGAHESASAMAQQLQELEQLA 384
            E   LA  FN F + LQ  I  +K          +Q+   A E+++ M QQ ++++Q+A
Sbjct: 416 DELGELAGWFNRFLDKLQPTIAEVKRSVQAARGTADQSSAIATETSAGMEQQYRQVDQVA 475

Query: 385 TAMHEMAVTATEVANNAQGAAAAAHEADEASQDGSKVVSDTTRSIDALSARIEQAVEEVK 444
           TA HEM+ TA +VA +A  AA AA +AD+A+++G  V+  TT SI AL+A +   + E++
Sbjct: 476 TASHEMSATAQDVARSAAQAAQAARDADQATREGLAVIDRTTSSIGALAANMSDTMAEIE 535

Query: 445 GLEVATGNIETILKVINDIADQTNLLALNAAIEAARAGESGRGFAVVADEVRTLAQRTQQ 504
           GL   +  I ++L+VI  IA+QTNLLALNAAIEAARAGE+GRGFAVVADEVR LAQRTQ+
Sbjct: 536 GLAQNSEKIGSVLEVIRSIAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLAQRTQE 595

Query: 505 STTEIRNMIEQLQSGASAVSAAMNESKYTADDAVQKAQLANESLQRIRGAIQRISDMNMQ 564
           S  E R +IE LQ+G   V  AM+ S   A   V++   A  +LQRI  A+  I+DMN+Q
Sbjct: 596 SVEETRQVIEALQNGTREVVGAMDHSHRQAQGGVEQVGQAVTALQRIGQAVTVITDMNLQ 655

Query: 565 IASAAEEQSLVAEEINTNTVKIKDLSTQVADSAKSASMAMEVQTENVREQGKLLNTFIV 623
           IASAAEEQS VAEEIN+N   I+D++  ++  A  ++   +       +Q  L++ F V
Sbjct: 656 IASAAEEQSAVAEEINSNVATIRDVTESLSGQANESARVSQSLNSLANQQQALMDQFRV 714