Pairwise Alignments

Query, 377 a.a., succinyl-diaminopimelate desuccinylase from Vibrio cholerae E7946 ATCC 55056

Subject, 391 a.a., succinyl-diaminopimelate desuccinylase from Variovorax sp. OAS795

 Score =  413 bits (1062), Expect = e-120
 Identities = 211/384 (54%), Positives = 272/384 (70%), Gaps = 12/384 (3%)

Query: 4   SPVLALAKELISRQSVTPADAGCQDLMIERLKALGFEIESMVFEDT----TNFWARR--- 56
           S  L LA++LISR SVTP DAGCQ ++ ERL  LGF +E++         TN WA R   
Sbjct: 2   SRTLQLAEQLISRPSVTPEDAGCQQILGERLAPLGFTLETIESGPADFRVTNLWAVRRPA 61

Query: 57  -GTQSPLFVFAGHTDVVPAGPLSQWHTPPFEPTVIDGFLHGRGAADMKGSLACMIVAVER 115
             + S   VFAGHTDVVP GP+ QW + PF PT  DG L+GRGA DMK S+A  +V++E 
Sbjct: 62  HASGSKTLVFAGHTDVVPTGPVEQWTSHPFTPTHRDGKLYGRGACDMKTSVAAFVVSIEE 121

Query: 116 FIAEHPDHQGSIGFLITSDEEGPFINGTVRVVETLMARNELIDMCIVGEPSSTLAVGDVV 175
           F+   PD + ++  L+TSDEEGP ++GTV V   L AR E++D CIVGEP++    GD++
Sbjct: 122 FLEATPDPRLTLALLLTSDEEGPAVDGTVVVCNALAARGEVLDYCIVGEPTAVERCGDMI 181

Query: 176 KNGRRGSITGDLKVKGTQGHVAYPHLANNPVHKALPALAEL----AATQWDEGNAYFPPT 231
           KNGRRG+++G L VKG QGH+AYPHLA NPVH   PALAEL    AA  WD GNAYF PT
Sbjct: 182 KNGRRGTMSGKLTVKGVQGHIAYPHLAKNPVHAVAPALAELVAINAAAGWDAGNAYFQPT 241

Query: 232 SFQIPNLQAGTGASNVIPGEFDVQFNFRFSTELTDEEIKRRVHSVLDAHGLDYDVKWTLS 291
           S+QI N  +GTGASNVIPG   + FNFRFSTE T E +++RVH+VLDAHG+D  + WT+ 
Sbjct: 242 SWQISNFHSGTGASNVIPGSAVIDFNFRFSTESTPESLQKRVHAVLDAHGVDCTLAWTIG 301

Query: 292 GQPFLTDTGELLAAVVAAVEEVNHQAPALLTTGGTSDGRFIAQMGAQVVELGPVNATIHK 351
           G PFLT  GEL+++V AA+ +    A  L T+GGTSD RFIA++  QVVELGPVNA+IHK
Sbjct: 302 GLPFLTTPGELVSSVQAAIADETGIATELSTSGGTSDARFIAKICKQVVELGPVNASIHK 361

Query: 352 VNECVRIADLEKLTDMYQKTLNHL 375
           ++E + +A++E L ++Y++TL  L
Sbjct: 362 IDEHIDVAEIETLKNIYRRTLERL 385