Pairwise Alignments

Query, 377 a.a., succinyl-diaminopimelate desuccinylase from Vibrio cholerae E7946 ATCC 55056

Subject, 398 a.a., succinyl-diaminopimelate desuccinylase from Agrobacterium fabrum C58

 Score =  291 bits (745), Expect = 2e-83
 Identities = 164/385 (42%), Positives = 220/385 (57%), Gaps = 19/385 (4%)

Query: 2   TDSPVLALAKELISRQSVTPADAGCQDLMIERLKALGFEIES-MVFEDTT----NFWARR 56
           T  PV  LA  LI   SVTPA+ G   L+   L  LGF +E  M  ED T    N +AR 
Sbjct: 3   TTDPVANLAA-LIRCPSVTPAEGGALSLLDTLLSPLGFAVERVMATEDGTPDVENLYARL 61

Query: 57  GTQSPLFVFAGHTDVVPAGPLSQWHTPPFEPTVIDGFLHGRGAADMKGSLACMIVAVERF 116
           GT+ P  +FAGHTDVVP G  + W  PPF   +  G ++GRGA DMKG +AC + A+ R 
Sbjct: 62  GTEGPHLMFAGHTDVVPVGDEAAWSHPPFSADIAGGEMYGRGAVDMKGGIACFVAAIARH 121

Query: 117 IAEHPDHQGSIGFLITSDEEGPFINGTVRVVETLMARNELIDMCIVGEPSSTLAVGDVVK 176
           I +H   QGS+ FLIT DEEGP INGT +++E   A+ E  D C+VGEP++   +GD++K
Sbjct: 122 IGKHGKPQGSVSFLITGDEEGPSINGTSKLLEWAAAKGETWDACVVGEPTNPDQLGDMIK 181

Query: 177 NGRRGSITGDLKVKGTQGHVAYPHLANNPVHKALPALAELAATQWDEGNAYFPPTSFQIP 236
            GRRGS++G + V+G QGH AYPHLA+NP+   L     L    +D G   F P++ ++ 
Sbjct: 182 IGRRGSLSGRITVQGVQGHAAYPHLADNPIRGLLQLTHALMHPAFDHGTDDFQPSNLEVT 241

Query: 237 NLQAGTGASNVIPGEFDVQFNFRFSTELTDEEIKRRVHSVLDAHG-----------LDYD 285
            +  G  A+NVIP      FN RF+   T E ++  +   LDA             + Y+
Sbjct: 242 TVDTGNAATNVIPARATAAFNIRFNDSWTAESLRAEIIRRLDAAANEGELRPDRAPVKYE 301

Query: 286 VKWT-LSGQPFLTDTGELLAAVVAAVEEVNHQAPALLTTGGTSDGRFIAQMGAQVVELGP 344
           + W       FLT    L++++  A+E V  + P L TTGGTSD RFI      VVE G 
Sbjct: 302 IVWADRPSHVFLTRNNALISSLSGAIETVTGKEPKLSTTGGTSDARFIKDY-CPVVEFGL 360

Query: 345 VNATIHKVNECVRIADLEKLTDMYQ 369
           V  T+H V+E V +ADLE LT +Y+
Sbjct: 361 VGQTMHMVDERVAVADLETLTRIYE 385