Pairwise Alignments

Query, 378 a.a., flagellin E from Vibrio cholerae E7946 ATCC 55056

Subject, 481 a.a., B-type flagellin from Pseudomonas lactucae CFBP13502

 Score =  200 bits (508), Expect = 8e-56
 Identities = 123/301 (40%), Positives = 181/301 (60%), Gaps = 22/301 (7%)

Query: 1   MAMTVNTNVSALVAQRHLNSASEMLNQSLERLSSGNRINSAKDDAAGLQISNRLETQMRG 60
           MA+TVNTN+++L  Q +LN AS  L  S++RLSSG RINSAKDDAAGLQISNRL +Q+ G
Sbjct: 1   MALTVNTNLASLTVQNNLNKASGALQTSMQRLSSGLRINSAKDDAAGLQISNRLTSQING 60

Query: 61  LGIAVRNANDGISIMQTAEGAMQETTQLLQRMRDLSLQSANGSNSAAERVALQEEMAALN 120
           LG+A++NANDG SI QTAEGAMQ++T +LQ MR L+LQSANGS SA +R + Q + AAL 
Sbjct: 61  LGVAIKNANDGSSIAQTAEGAMQQSTNILQSMRTLALQSANGSPSAEDRKSNQAQYAALT 120

Query: 121 DELNRIAETTSFAGRKLLNGQFMKASFQIGASSGEAVQLSL-----RNMRSDSLEMGGFS 175
            EL RIA TT+F G+ LL+G F   SFQ+GA++ + + +S+      N+ S  L+  G +
Sbjct: 121 AELTRIATTTTFGGKNLLDGSFGTTSFQVGANANQTIDMSIGNVAANNIGSQQLKSQGVA 180

Query: 176 YVAAALADKQWQVTKGKQQLNISYVNAQGENENIQIQAKEGDDIEELATYINGKTDKVSA 235
             A  +A     VT G            G+++++ I A  G   +++A  +NG    ++A
Sbjct: 181 PSATGVAGGAIDVTGG------------GQSKSLTIAA--GASAKQIAAQMNGAVGGLAA 226

Query: 236 SVNEKGQ--LQLYIAGKETSGTLSFSGSLANELQMNLLGYEAVDNL-DISSAGGAQRAVS 292
           + +   Q  +        T  + +F+  + +   +   G  +  +L D   +  A+  +S
Sbjct: 227 TASTTAQFTVDATAIAAATPASANFTLQVGSGTAVQFTGVTSTSDLADQLKSNAAKLGIS 286

Query: 293 V 293
           V
Sbjct: 287 V 287



 Score =  105 bits (262), Expect = 3e-27
 Identities = 82/322 (25%), Positives = 149/322 (46%), Gaps = 18/322 (5%)

Query: 68  ANDGISIMQTAEGAMQETTQLLQRMRDLSLQSANGSNSAAERVALQEEMAALNDELNRIA 127
           AN+  S    ++G     T +     D++    + S + A   + ++  A +N  +  +A
Sbjct: 166 ANNIGSQQLKSQGVAPSATGVAGGAIDVTGGGQSKSLTIAAGASAKQIAAQMNGAVGGLA 225

Query: 128 ETTSFAGRKLLNGQFM------KASFQIGASSGEAVQLSLRNMRSDSLEMGGFSYVAAAL 181
            T S   +  ++   +       A+F +   SG AVQ +     SD  +    +     +
Sbjct: 226 ATASTTAQFTVDATAIAAATPASANFTLQVGSGTAVQFTGVTSTSDLADQLKSNAAKLGI 285

Query: 182 ADKQWQVT-----KGKQQLNISY-VNAQGENENIQIQAKEGDDIEELATYINGKTDKVSA 235
           +      T     K     N+++     G    +++   +G      A  +       + 
Sbjct: 286 SVNYDSTTNALSVKSDTGENLTFNAGDAGAIAGVKVATLDGTGTAGTAVALAATAIIATG 345

Query: 236 SVNEKGQLQLYIAGKETSGTLSFSGSLANELQMNLLGYEAVDNLDISSAGGAQRAVSVID 295
           +V+        ++G   +G  + +G+ AN  +        V+N DI+SA  AQ ++ VI 
Sbjct: 346 AVSLNSSSSYSLSGAGVTGLFAAAGTAANSTKTT------VNNTDITSAANAQNSIDVIT 399

Query: 296 TALKYVDGHRSELGAMQNRFQHAISNLDNVHENLAASNSRIKDADYAKETTQMIKQQILQ 355
            A+  +D  R+ LGA+QNRF + ++NL ++ +N +A+  +I+D DYA ET Q+ KQQ LQ
Sbjct: 400 QAISDIDSQRAGLGAVQNRFDNTVANLQSIADNSSAARGQIQDVDYAAETAQLTKQQTLQ 459

Query: 356 QVSTSVLAQAKRQPKFVLFLLR 377
           Q ST++L+QA + P  VL LL+
Sbjct: 460 QASTAILSQANQLPSAVLKLLQ 481