Pairwise Alignments

Query, 378 a.a., flagellin E from Vibrio cholerae E7946 ATCC 55056

Subject, 495 a.a., Flagellar biosynthesis protein FliC from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  145 bits (366), Expect = 2e-39
 Identities = 107/322 (33%), Positives = 160/322 (49%), Gaps = 24/322 (7%)

Query: 1   MAMTVNTNVSALVAQRHLNSASEMLNQSLERLSSGNRINSAKDDAAGLQISNRLETQMRG 60
           MA  +NTN  +L+ Q +LN +   L  ++ERLSSG RINSAKDDAAG  I+NR    ++G
Sbjct: 1   MAQVINTNSLSLLTQNNLNKSQSALGTAIERLSSGLRINSAKDDAAGQAIANRFTANIKG 60

Query: 61  LGIAVRNANDGISIMQTAEGAMQETTQLLQRMRDLSLQSANGSNSAAERVALQEEMAALN 120
           L  A RNANDGISI QT EGA+ E    LQR+R+L++QSAN +NS ++  ++Q E+    
Sbjct: 61  LTQASRNANDGISIAQTTEGALNEINNNLQRVRELAVQSANSTNSQSDLDSIQAEITQRL 120

Query: 121 DELNRIAETTSFAGRKLLNGQFMKASFQIGASSGEAVQLSLRNMRSDSLEMGGFSYVAAA 180
           +E++R++  T F G K+L  Q    + Q+GA+ GE + + L+ + S +L +   +     
Sbjct: 121 NEIDRVSGQTQFNGVKVL-AQDNTLTIQVGANDGETIDIDLKQINSQTLGLDTLNVQQKY 179

Query: 181 LADKQWQVTKGKQQLNISYVNAQ---------GENENIQIQAKEGDDIEELATYI----- 226
                     G     I+  N+          G ++ I    K  D   +    +     
Sbjct: 180 KVSDTAATVTGYADTTIALDNSTFKASATGLGGTDQKIDGDLKFDDTTGKYYAKVTVTGG 239

Query: 227 NGKTDKVSASVNEKGQLQLYIAGKETSGTLSFSGSLANELQMNLLGYEAVDNLDISSAGG 286
            GK      SV +K   ++ +AG  TS       + A E   N+     V N D++ A  
Sbjct: 240 TGKDGYYEVSV-DKTNGEVTLAGGATSPLTGGLPATATEDVKNV----QVANADLTEAKA 294

Query: 287 AQRAVSVIDTA----LKYVDGH 304
           A  A  V  TA    + Y D +
Sbjct: 295 ALTAAGVTGTASVVKMSYTDNN 316



 Score = 96.7 bits (239), Expect = 1e-24
 Identities = 73/208 (35%), Positives = 106/208 (50%), Gaps = 31/208 (14%)

Query: 188 VTKGKQQLNISYVNAQGENENIQIQAKEGDDIEELATYINGKTDKVSASVNEKGQLQL-- 245
           VT     + +SY +  G+  +  +  K GDD               SA+ N+ G + +  
Sbjct: 301 VTGTASVVKMSYTDNNGKTIDGGLAVKVGDDY-------------YSATQNKDGSISINT 347

Query: 246 --YIAGKETSGT-LSFSGSLANELQMNLLG-------------YEAVDNLDISSAGGAQR 289
             Y A   TS T L+  G    + ++  +G             ++A  +L  ++A   + 
Sbjct: 348 TKYTADDGTSKTALNKLGGADGKTEVVSIGGKTYAASKAEGHNFKAQPDLAEAAATTTEN 407

Query: 290 AVSVIDTALKYVDGHRSELGAMQNRFQHAISNLDNVHENLAASNSRIKDADYAKETTQMI 349
            +  ID AL  VD  RS+LGA+QNRF  AI+NL N   NL ++ SRI+D+DYA E + M 
Sbjct: 408 PLQKIDAALAQVDTLRSDLGAVQNRFNSAITNLGNTVNNLTSARSRIEDSDYATEVSNMS 467

Query: 350 KQQILQQVSTSVLAQAKRQPKFVLFLLR 377
           + QILQQ  TSVLAQA + P+ VL LLR
Sbjct: 468 RAQILQQAGTSVLAQANQVPQNVLSLLR 495