Pairwise Alignments

Query, 378 a.a., flagellin E from Vibrio cholerae E7946 ATCC 55056

Subject, 506 a.a., Flagellar biosynthesis protein FliC from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  144 bits (363), Expect = 5e-39
 Identities = 77/169 (45%), Positives = 112/169 (66%), Gaps = 1/169 (0%)

Query: 1   MAMTVNTNVSALVAQRHLNSASEMLNQSLERLSSGNRINSAKDDAAGLQISNRLETQMRG 60
           MA  +NTN  +L+ Q +LN +   L  ++ERLSSG RINSAKDDAAG  I+NR    ++G
Sbjct: 1   MAQVINTNSLSLLTQNNLNKSQSALGTAIERLSSGLRINSAKDDAAGQAIANRFTANIKG 60

Query: 61  LGIAVRNANDGISIMQTAEGAMQETTQLLQRMRDLSLQSANGSNSAAERVALQEEMAALN 120
           L  A RNANDGISI QT EGA+ E    LQR+R+L++QSAN +NS ++  ++Q E+    
Sbjct: 61  LTQASRNANDGISIAQTTEGALNEINNNLQRVRELAVQSANSTNSQSDLDSIQAEITQRL 120

Query: 121 DELNRIAETTSFAGRKLLNGQFMKASFQIGASSGEAVQLSLRNMRSDSL 169
           +E++R++  T F G K+L  Q    + Q+GA+ GE + + L+ + S +L
Sbjct: 121 NEIDRVSGQTQFNGVKVL-AQDNTLTIQVGANDGETIDIDLKQINSQTL 168



 Score = 99.8 bits (247), Expect = 2e-25
 Identities = 68/193 (35%), Positives = 99/193 (51%), Gaps = 6/193 (3%)

Query: 191 GKQQLNISYVNAQGENENIQIQAKEGD-----DIEELATYINGKTDKVSASVNEKGQLQL 245
           G + + +SY +  G+        K GD     D +E    I  KT   +A+         
Sbjct: 314 GAELVKMSYTDKNGKTIEGGYALKAGDKYYAADYDEATGAIKAKTTSYTAADGTTKTAAN 373

Query: 246 YIAGKE-TSGTLSFSGSLANELQMNLLGYEAVDNLDISSAGGAQRAVSVIDTALKYVDGH 304
            + G +  +  ++  G   N  +     ++A   L  ++A   +  +  ID AL  VD  
Sbjct: 374 QLGGVDGKTEVVTIDGKTYNASKAAGHDFKAQPELAEAAAKTTENPLQKIDAALAQVDAL 433

Query: 305 RSELGAMQNRFQHAISNLDNVHENLAASNSRIKDADYAKETTQMIKQQILQQVSTSVLAQ 364
           RS+LGA+QNRF  AI+NL N   NL+ + SRI+D+DYA E + M + QILQQ  TSVLAQ
Sbjct: 434 RSDLGAVQNRFNSAITNLGNTVNNLSEARSRIEDSDYATEVSNMSRAQILQQAGTSVLAQ 493

Query: 365 AKRQPKFVLFLLR 377
           A + P+ VL LLR
Sbjct: 494 ANQVPQNVLSLLR 506