Pairwise Alignments

Query, 378 a.a., flagellin E from Vibrio cholerae E7946 ATCC 55056

Subject, 568 a.a., flagellin FliC from Escherichia coli ECOR38

 Score =  147 bits (372), Expect = 6e-40
 Identities = 75/175 (42%), Positives = 118/175 (67%), Gaps = 1/175 (0%)

Query: 1   MAMTVNTNVSALVAQRHLNSASEMLNQSLERLSSGNRINSAKDDAAGLQISNRLETQMRG 60
           MA  +NTN  +L+ Q ++N     L+ S+ERLSSG RINSAKDDAAG  I+NR  + ++G
Sbjct: 1   MAQVINTNSLSLITQNNINKNQSALSSSIERLSSGLRINSAKDDAAGQAIANRFTSNIKG 60

Query: 61  LGIAVRNANDGISIMQTAEGAMQETTQLLQRMRDLSLQSANGSNSAAERVALQEEMAALN 120
           L  A RNANDGIS+ QT EGA+ E    LQR+R+L++Q++ G+NS ++  ++Q+E+ +  
Sbjct: 61  LTQAARNANDGISVAQTTEGALSEINNNLQRIRELTVQASTGTNSDSDLDSIQDEIKSRL 120

Query: 121 DELNRIAETTSFAGRKLLNGQFMKASFQIGASSGEAVQLSLRNMRSDSLEMGGFS 175
           DE++R++  T F G  +L  +      Q+GA+ G+ + + L+ + SD+L + GF+
Sbjct: 121 DEIDRVSGQTQFNGVNVL-AKDGSMKIQVGANDGQTITIDLKKIDSDTLGLNGFN 174



 Score = 90.1 bits (222), Expect = 1e-22
 Identities = 60/179 (33%), Positives = 93/179 (51%), Gaps = 13/179 (7%)

Query: 201 NAQGENENIQIQAKEGDDIEELATY-INGKTDKVSASVNEKGQLQLYIAGKETSGTLSFS 259
           N  G   +         ++   A+Y IN   DK + +V         +A      T  F+
Sbjct: 400 NTNGAGNSNDTYTDADKELTTTASYTINYNVDKDTGTVT--------VASNGAGATGKFA 451

Query: 260 GSLANELQMNLLGYEAVDNLDISSAGGAQR-AVSVIDTALKYVDGHRSELGAMQNRFQHA 318
            ++  +  +N  G    +    +SAG A +  ++ +D A+  +D  RS LGA+QNR   A
Sbjct: 452 ATVGAQAYVNSTGKLTTET---TSAGTATKDPLAALDDAISSIDKFRSSLGAIQNRLDSA 508

Query: 319 ISNLDNVHENLAASNSRIKDADYAKETTQMIKQQILQQVSTSVLAQAKRQPKFVLFLLR 377
           ++NL+N   NL+ + SRI+DADYA E + M K QI+QQ   SVLA+A + P+ VL LL+
Sbjct: 509 VTNLNNTTTNLSEAQSRIQDADYATEVSNMSKAQIIQQAGNSVLAKANQVPQQVLSLLQ 567